CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0518200

Gene name
Homology with Arabidopsis Similar to At1g22340: AtUGT85A7 (UDP-glucosyl transferase 85A7) (HF=1e-2)

Module size 6 genes

NF 0.75

%ile 96.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.79 Os09g0518200 AK064395.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At1g22340 AtUGT85A7 (UDP-glucosyl transferase 85A7) O.I. H.G. S.X.
0.80 94.6 0.84 Os10g0528400 AF309379.1 - Glutathione S-transferase, C-terminal domaincontaining protein 1e-1 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) O.I. H.G. S.X.
0.73 91.1 0.83 Os10g0530900 AF309376.1 - Glutathione S-transferase GST 30 (EC 2.5.1.18) 2e+0 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.73 91.1 0.84 Os03g0154000 AK103088.1 - Aromatic-ring hydroxylase family protein 3e+0 At3g13882 structural constituent of ribosome O.I. H.G. S.X.
0.71 89.6 0.84 Os10g0528300 AF309378.1 - Tau class GST protein 4 2e-4 At3g43800 ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27) O.I. H.G. S.X.
0.55 73.7 0.84 Os03g0283200 AF237487.2 - IN2-1 protein 2e+0 At5g02780 In2-1 protein, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	79.7	0.79	Os09g0518200	AK064395.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-2	At1g22340	AtUGT85A7 (UDP-glucosyl transferase 85A7)	O.I.	H.G.	S.X.
0.80	94.6	0.84	Os10g0528400	AF309379.1	-	Glutathione S-transferase, C-terminal domaincontaining protein	1e-1	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.
0.73	91.1	0.83	Os10g0530900	AF309376.1	-	Glutathione S-transferase GST 30 (EC 2.5.1.18)	2e+0	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.
0.73	91.1	0.84	Os03g0154000	AK103088.1	-	Aromatic-ring hydroxylase family protein	3e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.
0.71	89.6	0.84	Os10g0528300	AF309378.1	-	Tau class GST protein 4	2e-4	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.
0.55	73.7	0.84	Os03g0283200	AF237487.2	-	IN2-1 protein	2e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
57.0 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.3 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.0 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
8.6 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM100442 Rice Azucena 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
8.4 97.7 GSM100445 Rice Bala 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
57.0	99.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.3	98.1	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM149410	Rice Azucena 1ppm Arsenate Rep3	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.0	97.8	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM100446	Rice Bala 1ppm Arsenate Rep2	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
8.6	97.8	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM100442	Rice Azucena 1ppm Arsenate Rep2	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
8.4	97.7	GSM100445	Rice Bala 1ppm Arsenate Rep1	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g22340, orthologous to the query gene, Os09g0518200

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.71 84.2 At1g22340 838841 AtUGT85A7 (UDP-glucosyl transferase 85A7) F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. H.G. S.X.
0.43 55.3 At4g19190 827658 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.41 52.4 At4g05210 825869 bacterial transferase hexapeptide repeat-containing protein F:transferase activity;P:biological_process unknown;C:cellular_component unknown;BOAPFMV O.I. H.G. S.X.
0.40 50.8 At5g39680 833964 EMB2744 (EMBRYO DEFECTIVE 2744) F:unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;POMF O.I. H.G. S.X.
0.32 35.7 At3g53360 824504 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. H.G. S.X.
0.31 33.8 At5g40410 834039 - F:unknown;P:biological_process unknown;C:unknown;POMF O.I. H.G. S.X.
0.31 33.8 At1g77010 844037 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMF O.I. H.G. S.X.
0.30 32.1 At5g54950 835586 aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related F:molecular_function unknown;P:metabolic process;C:cellular_component unknown;MPOB O.I. H.G. S.X.
0.27 26.2 At1g02570 839485 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.27 26.2 At4g28010 828915 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. H.G. S.X.
0.27 26.2 At3g11460 820319 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB O.I. H.G. S.X.
0.27 26.2 At1g09680 837496 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. H.G. S.X.
0.25 22.6 At3g13682 820577 LDL2 (LSD1-LIKE2) Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA. O.I. H.G. S.X.
0.23 19.3 At5g63820 836502 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.23 19.3 At5g02990 831714 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVFA O.I. H.G. S.X.
0.23 19.3 At3g28640 822494 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMF O.I. H.G. S.X.
0.22 17.5 At5g49410 835001 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.21 15.8 At4g19220 827662 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. H.G. S.X.
0.21 15.8 At2g43930 818997 protein kinase family protein F:amino acid transmembrane transporter activity, protein kinase activity, ATP binding;P:amino acid transport, protein amino acid phosphorylation;C:membrane;MFPOB O.I. H.G. S.X.
0.20 14.4 At1g74400 843781 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. H.G. S.X.
0.18 11.4 At3g13770 820586 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB O.I. H.G. S.X.
0.17 10.2 At5g18475 2745987 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. H.G. S.X.
0.16 8.8 At5g50970 835170 WD-40 repeat family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFP O.I. H.G. S.X.
0.16 8.8 At3g13228 820519 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV O.I. H.G. S.X.
0.16 8.8 At1g20800 838671 F-box family protein F-box family protein O.I. H.G. S.X.
0.15 7.8 At3g04750 819635 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMB O.I. H.G. S.X.
0.14 6.8 At1g56345 842088 pseudouridine synthase family protein F:pseudouridine synthase activity;P:pseudouridine synthesis;C:endomembrane system;BOMFPA O.I. H.G. S.X.
0.13 5.8 At4g15810 827262 GTP binding F:GTP binding;P:biological_process unknown;C:chloroplast outer membrane;BMOPFA O.I. H.G. S.X.
0.09 2.8 At4g11950 826802 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.09 2.8 At1g76170 843949 ATP binding F:ATP binding;P:tRNA processing;C:cellular_component unknown;BOAFMP O.I. H.G. S.X.
0.08 2.3 At3g22430 821813 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBPFVA O.I. H.G. S.X.
0.04 0.9 At2g36370 818210 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPFOBV O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
0.71	84.2	At1g22340	838841	AtUGT85A7 (UDP-glucosyl transferase 85A7)	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	H.G.	S.X.
0.43	55.3	At4g19190	827658	zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	H.G.	S.X.
0.41	52.4	At4g05210	825869	bacterial transferase hexapeptide repeat-containing protein	F:transferase activity;P:biological_process unknown;C:cellular_component unknown;BOAPFMV	O.I.	H.G.	S.X.
0.40	50.8	At5g39680	833964	EMB2744 (EMBRYO DEFECTIVE 2744)	F:unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;POMF	O.I.	H.G.	S.X.
0.32	35.7	At3g53360	824504	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	H.G.	S.X.
0.31	33.8	At5g40410	834039	-	F:unknown;P:biological_process unknown;C:unknown;POMF	O.I.	H.G.	S.X.
0.31	33.8	At1g77010	844037	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMF	O.I.	H.G.	S.X.
0.30	32.1	At5g54950	835586	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	F:molecular_function unknown;P:metabolic process;C:cellular_component unknown;MPOB	O.I.	H.G.	S.X.
0.27	26.2	At1g02570	839485	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.27	26.2	At4g28010	828915	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	H.G.	S.X.
0.27	26.2	At3g11460	820319	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFB	O.I.	H.G.	S.X.
0.27	26.2	At1g09680	837496	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	H.G.	S.X.
0.25	22.6	At3g13682	820577	LDL2 (LSD1-LIKE2)	Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA.	O.I.	H.G.	S.X.
0.23	19.3	At5g63820	836502	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.23	19.3	At5g02990	831714	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVFA	O.I.	H.G.	S.X.
0.23	19.3	At3g28640	822494	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMF	O.I.	H.G.	S.X.
0.22	17.5	At5g49410	835001	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.21	15.8	At4g19220	827662	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	H.G.	S.X.
0.21	15.8	At2g43930	818997	protein kinase family protein	F:amino acid transmembrane transporter activity, protein kinase activity, ATP binding;P:amino acid transport, protein amino acid phosphorylation;C:membrane;MFPOB	O.I.	H.G.	S.X.
0.20	14.4	At1g74400	843781	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	H.G.	S.X.
0.18	11.4	At3g13770	820586	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFB	O.I.	H.G.	S.X.
0.17	10.2	At5g18475	2745987	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	H.G.	S.X.
0.16	8.8	At5g50970	835170	WD-40 repeat family protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFP	O.I.	H.G.	S.X.
0.16	8.8	At3g13228	820519	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV	O.I.	H.G.	S.X.
0.16	8.8	At1g20800	838671	F-box family protein	F-box family protein	O.I.	H.G.	S.X.
0.15	7.8	At3g04750	819635	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMB	O.I.	H.G.	S.X.
0.14	6.8	At1g56345	842088	pseudouridine synthase family protein	F:pseudouridine synthase activity;P:pseudouridine synthesis;C:endomembrane system;BOMFPA	O.I.	H.G.	S.X.
0.13	5.8	At4g15810	827262	GTP binding	F:GTP binding;P:biological_process unknown;C:chloroplast outer membrane;BMOPFA	O.I.	H.G.	S.X.
0.09	2.8	At4g11950	826802	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.09	2.8	At1g76170	843949	ATP binding	F:ATP binding;P:tRNA processing;C:cellular_component unknown;BOAFMP	O.I.	H.G.	S.X.
0.08	2.3	At3g22430	821813	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBPFVA	O.I.	H.G.	S.X.
0.04	0.9	At2g36370	818210	ubiquitin-protein ligase	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPFOBV	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os09g0518200
Gene name
Homology with Arabidopsis	Similar to At1g22340: AtUGT85A7 (UDP-glucosyl transferase 85A7) (HF=1e-2)
Module size	6 genes
NF	0.75
%ile	96.4

Co-expression analysis

Gene ID Os09g0518200 Gene name Homology with ArabidopsisSimilar to At1g22340: AtUGT85A7 (UDP-glucosyl transferase 85A7) (HF=1e-2) Module size 6 genes NF 0.75 %ile 96.4

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os09g0518200

Gene name
Homology with Arabidopsis Similar to At1g22340: AtUGT85A7 (UDP-glucosyl transferase 85A7) (HF=1e-2)

Module size 6 genes

NF 0.75

%ile 96.4

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays