CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0497900

Gene name
Homology with Arabidopsis Similar to At3g18400: anac058 (Arabidopsis NAC domain containing protein 58) (HF=1e-21)

Module size 6 genes

NF 0.22

%ile 20.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.88 Os09g0497900 AK102511.1 - No apical meristem (NAM) protein domain containingprotein 1e-21 At3g18400 anac058 (Arabidopsis NAC domain containing protein 58) O.I. H.G. S.X.
0.36 44.0 0.90 Os08g0203700 AK100532.1 - Protein kinase domain containing protein 2e-3 At1g56120 kinase O.I. H.G. S.X.
0.21 17.9 0.90 Os05g0148900 AK120912.1 - Glutathione-S-transferase 19E50 1e+0 At1g03860 ATPHB2 (PROHIBITIN 2) O.I. H.G. S.X.
0.20 16.5 0.88 Os01g0734000 AY341845.1 - WRKY DNA binding protein 7e-13 At2g46130 WRKY43 O.I. H.G. S.X.
0.19 15.1 0.91 Os02g0767400 AK072314.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 4e-7 At5g35370 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.
0.12 7.2 0.88 Os09g0557500 AK059161.1 - Protein of unknown function DUF250 domaincontaining protein 2e-1 At1g09190 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.1 97.9 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
6.7 97.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.8 97.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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