Co-expression analysis

Gene ID Os09g0486500
Gene name
Homology with ArabidopsisSimilar to At5g24290: integral membrane family protein (HF=2e+0)
Module size 6 genes
NF 0.56
%ile 76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.92Os09g0486500AF140722.2-Multiple stress-responsive zinc-finger protein(Multiple stress- associated zinc-finger protein)2e+0At5g24290integral membrane family proteinO.I.H.G.S.X.
0.7391.10.93Os04g05435009632.m04421-Homeodomain-like containing protein2e+0At2g44730transcription factorO.I.H.G.S.X.
0.6787.20.92Os03g0761100AK066083.1-Protein phosphatase 2C-like protein6e-8At4g33920protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.6181.20.93Os05g0497300AK111755.1-Ethylene responsive element binding factor 5(AtERF5)4e-14At3g15210ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)O.I.H.G.S.X.
0.3134.50.93Os01g0908700AK120427.1-Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A))2e-17At1g67800copine-relatedO.I.H.G.S.X.
0.3032.70.93Os04g0584600AB042550.1-Calcium dependent protein kinase3e-44At2g17290CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.498.1GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.197.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.897.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.696.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.196.6GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.996.5GSM159191Young inflorescence (P1, upto 3 cm), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
4.796.4GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.296.0GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.296.0GSM159190Young inflorescence (P1, upto 3 cm), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0381GO:0006470The process of removing one or more phosphoric residues from a protein.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage