CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0481800

Gene name
Homology with Arabidopsis Similar to At5g50240: PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) (HF=7e+0)

Module size 6 genes

NF 0.54

%ile 71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.95 Os09g0481800 AK062669.1 - Nitrogen-fixing NifU, C-terminal domain containingprotein 7e+0 At5g50240 PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) O.I. H.G. S.X.
0.60 79.7 0.95 Os08g0541400 AK068255.1 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 1e-17 At2g43560 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.55 73.7 0.95 Os06g0663800 AK105843.1 - FKBP-type peptidyl-prolyl cis-trans isomerase 3,chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase)(AtFKBP13) (FK506 binding protein 1) 2e+0 At5g64350 FKBP12 (FK506-BINDING PROTEIN) O.I. H.G. S.X.
0.43 55.4 0.96 Os03g0685000 AK059896.1 - Ferredoxin 5e-10 At1g32550 ferredoxin family protein O.I. H.G. S.X.
0.40 51.1 0.95 Os04g0591000 AK072902.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At3g49940 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) O.I. H.G. S.X.
0.30 32.7 0.95 Os04g0626400 AK059851.1 - Calycin family protein 7e-16 At3g47860 apolipoprotein D-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.4 99.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.4 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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