Co-expression analysis

Gene ID Os09g0481650
Gene name
Homology with ArabidopsisSimilar to At1g44830: AP2 domain-containing transcription factor TINY, putative (HF=3e-1)
Module size 7 genes
NF 0.56
%ile 76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.98Os09g04816509637.m02714--3e-1At1g44830AP2 domain-containing transcription factor TINY, putativeO.I.H.G.S.X.
0.7189.60.98Os03g06224009631.m04085-Conserved hypothetical protein4e+0At5g05370ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeO.I.H.G.S.X.
0.5573.70.98Os06g0275750NM_185804.1--1e-1At2g27580zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.5371.30.98Os03g06381009631.m04211--3e+0At2g22470AGP2 (ARABINOGALACTAN PROTEIN 2)O.I.H.G.S.X.
0.4458.10.98Os10g03274009638.m01495--2e+0At5g67190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4253.90.98Os12g06399009640.m04362--2e-1At1g52827unknown proteinO.I.H.G.S.X.
0.4051.10.99Os07g06321009635.m04398--5e+0At5g01530chlorophyll A-B binding protein CP29 (LHCB4)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7189.60.98Os08g0426700NM_188974.1--6e+0At4g30460glycine-rich proteinO.I.H.G.S.X.
0.6787.20.97Os05g03431009633.m02519--1e+0At4g39360unknown proteinO.I.H.G.S.X.
0.5371.30.96Os04g03771009632.m02925--5e-1At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.5068.00.98Os06g04906009634.m02828--6e+0At4g31470pathogenesis-related protein, putativeO.I.H.G.S.X.
0.5068.00.98Os07g01042009635.m00040--4e+0At1g12090ELP (EXTENSIN-LIKE PROTEIN)O.I.H.G.S.X.
0.4863.70.97Os05g0130500AK121598.1-Hypothetical protein4e-2At3g02910-O.I.H.G.S.X.
0.4762.30.98Os09g0479200AK110348.1-Leucine-rich repeat, plant specific containingprotein2e+0At5g22200harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.4660.90.96Os03g04314009631.m03119--1e+1At5g67490unknown proteinO.I.H.G.S.X.
0.4660.90.98Os09g02593669637.m00619--6e+0At5g60400unknown proteinO.I.H.G.S.X.
0.4660.90.98Os10g05506009638.m03653--1e+0At3g55440TPI (TRIOSEPHOSPHATE ISOMERASE)O.I.H.G.S.X.
0.4458.10.97Os03g04202009631.m03007--4e-1At5g22820bindingO.I.H.G.S.X.
0.4458.10.99Os12g01158339640.m00142--1e+1At5g11280unknown proteinO.I.H.G.S.X.
0.4051.10.98Os01g03504009629.m02403--1e+0At1g49750leucine-rich repeat family proteinO.I.H.G.S.X.
0.3846.90.97Os03g08448509631.m06204--2e+0At5g66700HB53O.I.H.G.S.X.
0.3846.90.98Os06g0528000NM_196265.1--1e+0At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)O.I.H.G.S.X.
0.3846.90.99Os05g03089009633.m02163--3e+0At4g22950AGL19 (AGAMOUS-LIKE 19)O.I.H.G.S.X.
0.3541.70.97Os11g01498009639.m00439--2e+0At3g17160unknown proteinO.I.H.G.S.X.
0.3338.80.93Os04g03334009632.m02502--9e-1At1g15840unknown proteinO.I.H.G.S.X.
0.3338.80.99Os11g06307409639.m03790--3e-1At1g64220TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2)O.I.H.G.S.X.
0.3236.30.97Os07g04560009635.m02632--1e+0At4g271502S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2O.I.H.G.S.X.
0.2931.10.97Os03g0695400AK070048.1-Ankyrin repeat containing protein7e+0At4g36240zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.2931.10.97Os09g03709009637.m01748--2e+0At3g09735DNA-binding S1FA family proteinO.I.H.G.S.X.
0.2931.10.97Os11g07071009639.m04489-Homeodomain-like containing protein3e-15At2g39730RCA (RUBISCO ACTIVASE)O.I.H.G.S.X.
0.2931.10.98Os09g02601019637.m00627--2e+0At1g02620GTP-binding protein (SAR1A)O.I.H.G.S.X.
0.2931.10.98Os11g07042009639.m04471--8e-1At5g58005unknown proteinO.I.H.G.S.X.
0.2727.50.97Os11g02157009639.m01035--6e-2At5g17650glycine/proline-rich proteinO.I.H.G.S.X.
0.2727.50.94Os08g04755009636.m03723-Conserved hypothetical protein6e-1At4g10480nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeO.I.H.G.S.X.
0.2727.50.98Os03g06772509631.m04603--2e+0At3g57500unknown proteinO.I.H.G.S.X.
0.2625.60.97Os11g04870009639.m02681--7e-2At3g55880unknown proteinO.I.H.G.S.X.
0.2625.60.98Os05g04293009633.m03300--2e+0At5g18240MYR1 (MYb-related protein 1)O.I.H.G.S.X.
0.2524.10.96Os03g07404009631.m05187--2e+1At5g42223-O.I.H.G.S.X.
0.2524.10.98Os01g0188850NM_189648.1--1e+0At3g52420OEP7 (OUTER ENVELOPE MEMBRANE PROTEIN 7)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.699.1GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
16.098.7GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
14.898.6GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
12.698.4GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.098.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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