Co-expression analysis

Gene ID	Os09g0475132
Gene name
Homology with Arabidopsis	Similar to At5g49280: hydroxyproline-rich glycoprotein family protein (HF=1e+1)
Module size	8 genes
NF	0.03
%ile	1.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	93.1	0.82	Os09g0475132	9637.m02664	-	-	1e+1	At5g49280	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	0.86	Os11g0155500	9639.m00485	-	Amino acid/polyamine transporter I family protein	4e-18	At5g04770	CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	0.82	Os02g0222400	9630.m01184	-	-	2e-1	At1g06475	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	3.0	0.83	Os11g0499600	AK106189.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	1e-3	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	0.84	Os12g0151500	AK105865.1	-	Glycosyl transferase, family 29 protein	1e+1	At5g29807	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1.0	0.87	Os01g0225300	CA760234	-	Conserved hypothetical protein	3e-19	At5g62650	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	0.5	0.83	Os03g0178000	D10400.1	-	-	1e-54	At1g07930	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	0.5	0.80	Os04g0308100	AK100568.1	-	The start codon is not identified.	2e-3	At1g34315	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
40.1	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.9	98.3	GSM159220	Seed (S5, 21 - 29 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
10.5	98.1	GSM159263	Drought stress, biological rep 2	GSE6901	Expression data for stress treatment in rice seedlings
10.2	98.0	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM159264	Drought stress, biological rep 3	GSE6901	Expression data for stress treatment in rice seedlings
9.6	97.9	GSM159262	Drought stress, biological rep 1	GSE6901	Expression data for stress treatment in rice seedlings
9.0	97.8	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM159219	Seed (S5, 21 - 29 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
8.8	97.8	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6	97.8	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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