Co-expression analysis

Gene ID Os09g0471800
Gene name
Homology with ArabidopsisSimilar to At2g37050: kinase (HF=5e-6)
Module size 6 genes
NF 0.20
%ile 18.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3644.00.96Os09g0471800AK071360.1-EGF-like calcium-binding domain containing protein5e-6At2g37050kinaseO.I.H.G.S.X.
0.3644.00.96Os10g0370100AY327045.1-Disease resistance protein family protein4e-1At3g25580thioredoxin-relatedO.I.H.G.S.X.
0.3338.80.96Os12g0209900AK060643.1-Hypothetical protein3e+0At2g03630unknown proteinO.I.H.G.S.X.
0.3338.80.96Os01g0115800AK120293.1-Protein kinase domain containing protein2e-2At4g21230protein kinase family proteinO.I.H.G.S.X.
0.2321.20.96Os01g01365009629.m00371-Hypothetical protein2e+0At2g35900unknown proteinO.I.H.G.S.X.
0.063.00.96Os05g0247900AK071717.1-SNF2-related domain containing protein1e-7At1g03750SWI2 (SWITCH 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.998.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.398.7GSM159218Seed (S4, 11 - 20 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
15.298.7GSM159220Seed (S5, 21 - 29 dap), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
15.198.6GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.698.4GSM159219Seed (S5, 21 - 29 dap), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
9.097.8GSM159216Seed (S4, 11 - 20 dap), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
8.897.8GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM159221Seed (S5, 21 - 29 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
8.597.7GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0121GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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