CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0471600

Gene name
Homology with Arabidopsis Similar to At1g06700: serine/threonine protein kinase, putative (HF=7e-9)

Module size 17 genes

NF 0.56

%ile 76.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.85 96.1 0.98 Os09g0471600 AK119296.1 - Protein kinase domain containing protein 7e-9 At1g06700 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.67 87.2 0.98 Os06g0560900 9634.m03471 - - 8e-2 At4g09660 - O.I. H.G. S.X.
0.64 83.4 0.98 Os10g0417100 9638.m02377 - - 1e+0 At5g01640 PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5) O.I. H.G. S.X.
0.63 82.7 0.98 Os02g0672901 9630.m04375 - - 4e+0 At5g64990 AtRABH1a (Arabidopsis Rab GTPase homolog H1a) O.I. H.G. S.X.
0.62 81.5 0.98 Os09g0239150 9637.m00389 - - 5e-2 At5g54410 unknown protein O.I. H.G. S.X.
0.60 79.7 0.98 Os02g0463100 9630.m02493 - - 5e-3 At4g09660 - O.I. H.G. S.X.
0.59 78.0 0.99 Os02g0188900 9630.m00874 - Cyclin-like F-box domain containing protein 6e-1 At3g48920 AtMYB45 (myb domain protein 45) O.I. H.G. S.X.
0.57 77.0 0.99 Os03g0594000 NM_184833.1 - - 2e+0 At4g37530 peroxidase, putative O.I. H.G. S.X.
0.54 71.9 0.98 Os12g0589400 AK119349.1 - Hypothetical protein 4e-1 At5g61440 ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5) O.I. H.G. S.X.
0.52 69.6 0.98 Os10g0378025 NM_196167.1 - - 4e+0 At5g50915 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.51 68.7 0.98 Os04g0442700 AK119975.1 - Hypothetical protein 6e+0 At5g43980 PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) O.I. H.G. S.X.
0.50 68.0 0.98 Os07g0583300 9635.m03933 - - 7e-1 At3g26960 unknown protein O.I. H.G. S.X.
0.49 64.4 0.98 Os02g0257900 9630.m01480 - - 3e+0 At1g70030 paired amphipathic helix repeat-containing protein O.I. H.G. S.X.
0.46 60.9 0.98 Os04g0502100 AK066956.1 - Conserved hypothetical protein 3e-1 At4g32290 unknown protein O.I. H.G. S.X.
0.44 58.1 0.98 Os01g0299200 NM_189182.1 - - 2e-1 At1g56570 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.43 55.4 0.98 Os08g0216400 9636.m01102 - - 6e+0 At5g12020 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) O.I. H.G. S.X.
0.34 40.0 0.99 Os10g0398000 NM_196353.1 - - 4e+0 At5g40970 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.85	96.1	0.98	Os09g0471600	AK119296.1	-	Protein kinase domain containing protein	7e-9	At1g06700	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os06g0560900	9634.m03471	-	-	8e-2	At4g09660	-	O.I.	H.G.	S.X.
0.64	83.4	0.98	Os10g0417100	9638.m02377	-	-	1e+0	At5g01640	PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5)	O.I.	H.G.	S.X.
0.63	82.7	0.98	Os02g0672901	9630.m04375	-	-	4e+0	At5g64990	AtRABH1a (Arabidopsis Rab GTPase homolog H1a)	O.I.	H.G.	S.X.
0.62	81.5	0.98	Os09g0239150	9637.m00389	-	-	5e-2	At5g54410	unknown protein	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os02g0463100	9630.m02493	-	-	5e-3	At4g09660	-	O.I.	H.G.	S.X.
0.59	78.0	0.99	Os02g0188900	9630.m00874	-	Cyclin-like F-box domain containing protein	6e-1	At3g48920	AtMYB45 (myb domain protein 45)	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os03g0594000	NM_184833.1	-	-	2e+0	At4g37530	peroxidase, putative	O.I.	H.G.	S.X.
0.54	71.9	0.98	Os12g0589400	AK119349.1	-	Hypothetical protein	4e-1	At5g61440	ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)	O.I.	H.G.	S.X.
0.52	69.6	0.98	Os10g0378025	NM_196167.1	-	-	4e+0	At5g50915	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.51	68.7	0.98	Os04g0442700	AK119975.1	-	Hypothetical protein	6e+0	At5g43980	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os07g0583300	9635.m03933	-	-	7e-1	At3g26960	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	0.98	Os02g0257900	9630.m01480	-	-	3e+0	At1g70030	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.
0.46	60.9	0.98	Os04g0502100	AK066956.1	-	Conserved hypothetical protein	3e-1	At4g32290	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os01g0299200	NM_189182.1	-	-	2e-1	At1g56570	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.43	55.4	0.98	Os08g0216400	9636.m01102	-	-	6e+0	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os10g0398000	NM_196353.1	-	-	4e+0	At5g40970	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.9 99.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
26.1 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.8 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.7 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
26.9	99.6	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
26.1	99.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.8	98.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.7	98.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4	98.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os09g0471600
Gene name
Homology with Arabidopsis	Similar to At1g06700: serine/threonine protein kinase, putative (HF=7e-9)
Module size	17 genes
NF	0.56
%ile	76.3

Co-expression analysis

Gene ID Os09g0471600 Gene name Homology with ArabidopsisSimilar to At1g06700: serine/threonine protein kinase, putative (HF=7e-9) Module size 17 genes NF 0.56 %ile 76.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os09g0471600

Gene name
Homology with Arabidopsis Similar to At1g06700: serine/threonine protein kinase, putative (HF=7e-9)

Module size 17 genes

NF 0.56

%ile 76.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays