CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0471200

Gene name
Homology with Arabidopsis Similar to At1g79670: RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1) (HF=8e-8)

Module size 15 genes

NF 0.20

%ile 18.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.96 Os09g0471200 9637.m02620 - Protein kinase domain containing protein 8e-8 At1g79670 RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1) O.I. H.G. S.X.
0.39 48.3 0.98 Os01g0956800 9629.m07190 - Disease resistance protein family protein 9e-2 At5g17680 disease resistance protein (TIR-NBS-LRR class), putative O.I. H.G. S.X.
0.36 44.0 0.99 Os04g0307866 9632.m02266 - - 3e-3 At3g47380 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.33 38.8 0.97 Os07g0588400 9635.m03987 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e-19 At4g33880 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.31 34.5 0.99 Os09g0408200 9637.m02078 - - 5e-1 At5g45580 transcription factor O.I. H.G. S.X.
0.24 22.4 0.98 Os09g0270700 9637.m00734 - NB-ARC domain containing protein 3e-1 At1g57620 emp24/gp25L/p24 family protein O.I. H.G. S.X.
0.22 19.4 0.98 Os04g0548100 AK065659.1 - Disease resistance protein family protein 1e-7 Atcg00510 - O.I. H.G. S.X.
0.22 19.4 0.99 Os04g0675800 9632.m05833 - Cyclin-like F-box domain containing protein 5e-1 At4g16295 SPH1 (S-PROTEIN HOMOLOGUE 1) O.I. H.G. S.X.
0.18 13.7 0.99 Os01g0946800 NM_186132.1 - Cold shock protein-1 4e-1 At4g26230 60S ribosomal protein L31 (RPL31B) O.I. H.G. S.X.
0.14 9.3 0.98 Os11g0590900 9639.m03433 - Disease resistance protein family protein 1e+0 At1g36675 glycine-rich protein O.I. H.G. S.X.
0.13 8.2 0.98 Os12g0228400 AK120234.1 - Chaperonin CPN60-1, mitochondrial precursor(HSP60-1) 3e-2 At3g23990 HSP60 (HEAT SHOCK PROTEIN 60) O.I. H.G. S.X.
0.13 8.2 0.97 Os11g0655300 AK074002.1 - Disease resistance protein family protein 4e-1 At4g36420 ribosomal protein L12 family protein O.I. H.G. S.X.
0.11 6.5 0.98 Os02g0308200 9630.m01963 - - 4e+0 At2g01240 reticulon family protein (RTNLB15) O.I. H.G. S.X.
0.11 6.5 0.98 Os05g0505900 AK106936.1 - Hypothetical protein 9e-1 At3g10040 transcription factor O.I. H.G. S.X.
0.10 5.7 0.99 Os06g0524900 AK121910.1 - Disease resistance protein family protein 2e+0 At3g46530 RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.5 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.1 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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