CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0462300

Gene name
Homology with Arabidopsis Similar to At5g16200: 50S ribosomal protein-related (HF=3e+0)

Module size 6 genes

NF 0.28

%ile 28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.96 Os09g0462300 9637.m02532 - Esterase/lipase/thioesterase domain containingprotein 3e+0 At5g16200 50S ribosomal protein-related O.I. H.G. S.X.
0.55 73.7 0.96 Os07g0216100 AK107820.1 - Hypothetical protein 9e-2 At5g66490 unknown protein O.I. H.G. S.X.
0.29 31.1 0.96 Os09g0433500 9637.m02294 - Glycosyl transferase, family 31 protein 5e-1 At3g29300 unknown protein O.I. H.G. S.X.
0.26 25.6 0.96 Os01g0176700 AK109808.1 - Myb, DNA-binding domain containing protein 1e-12 At2g03500 myb family transcription factor O.I. H.G. S.X.
0.22 19.4 0.96 Os02g0602600 9630.m03753 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e+0 At5g24316 proline-rich family protein O.I. H.G. S.X.
0.11 6.5 0.96 Os03g0118100 AK072029.1 - Conserved hypothetical protein 2e-1 At4g15460 glycine-rich protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.6	0.95	Os06g0272900	9634.m01625	-	Protein of unknown function DUF231 domaincontaining protein	3e+0	At5g19473	-	O.I.	H.G.	S.X.
0.60	79.7	0.93	Os05g0410800	AK108312.1	-	Conserved hypothetical protein	1e+0	At4g32340	-	O.I.	H.G.	S.X.
0.55	73.7	0.93	Os06g0487800	AU082409	-	-	4e-1	At2g05510	glycine-rich protein	O.I.	H.G.	S.X.
0.55	73.7	0.94	Os01g0254300	NM_187890.1	-	Pectinesterase (EC 3.1.1.11) (Fragment)	1e-3	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.
0.50	68.0	0.94	Os12g0157000	AK110593.1	-	Hypothetical protein	1e-5	At2g36080	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.47	62.3	0.92	Os05g0187500	9633.m00863	-	IQ calmodulin-binding region domain containingprotein	7e-1	At3g53235	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	0.93	Os08g0136100	AB101650.1	-	Anthocyaninless2	3e-12	At4g21750	ATML1 (MERISTEM LAYER 1)	O.I.	H.G.	S.X.
0.46	60.9	0.95	Os09g0110500	AK069507.1	-	Hypothetical protein	2e+0	At2g19300	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.93	Os05g0176200	9640.m03393	-	-	3e+0	At1g61930	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.95	Os05g0349400	AK107832.1	-	Hypothetical protein	4e+0	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.
0.36	44.0	0.93	Os01g0119500	AK105256.1	-	Conserved hypothetical protein	2e-1	At2g34330	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os08g0119500	9636.m00159	-	Conserved hypothetical protein	1e-13	At4g24805	methyltransferase	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os06g0659100	9634.m04348	-	Squamosa-promoter binding protein 1	3e-11	At2g33810	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	O.I.	H.G.	S.X.
0.32	36.3	0.93	Os06g0687600	CF196060	-	Uncharacterized plant-specific domain 01627containing protein	8e+0	At5g06265	hyaluronan mediated motility receptor-related	O.I.	H.G.	S.X.
0.31	34.5	0.93	Os03g0371800	9631.m02502	-	-	9e-6	At1g57560	AtMYB50 (myb domain protein 50)	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os03g0192300	9631.m00870	-	Protein of unknown function DUF966 family protein	2e+0	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os01g0187700	AK101445.1	-	Conserved hypothetical protein	1e+0	At2g20820	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.93	Os09g0266600	AK110823.1	-	NPH3 domain containing protein	3e+0	At5g22270	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.4 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
10.0 98.0 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
9.7 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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