Co-expression analysis

Gene ID	Os09g0462300
Gene name
Homology with Arabidopsis	Similar to At5g16200: 50S ribosomal protein-related (HF=3e+0)
Module size	6 genes
NF	0.28
%ile	28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.6	0.96	Os09g0462300	9637.m02532	-	Esterase/lipase/thioesterase domain containingprotein	3e+0	At5g16200	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.96	Os07g0216100	AK107820.1	-	Hypothetical protein	9e-2	At5g66490	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	0.96	Os09g0433500	9637.m02294	-	Glycosyl transferase, family 31 protein	5e-1	At3g29300	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	25.6	0.96	Os01g0176700	AK109808.1	-	Myb, DNA-binding domain containing protein	1e-12	At2g03500	myb family transcription factor	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	0.96	Os02g0602600	9630.m03753	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	3e+0	At5g24316	proline-rich family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	0.96	Os03g0118100	AK072029.1	-	Conserved hypothetical protein	2e-1	At4g15460	glycine-rich protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.4	99.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.5	98.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.9	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
10.0	98.0	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
9.7	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.17163.1.A1_at, orthologous to the query gene, Os09g0462300

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.8	Zm.17163.1.A1_at	At5g16200	-	-	1e+0	At2g24870	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.93	99.3	Zm.8306.1.A1_at	At5g16200	-	-	3e-4	At5g01960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.90	97.0	Zm.2176.1.S1_at	At5g16200	-	-	4e+0	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.85	95.9	Zm.14071.1.A1_at	At5g16200	hypothetical protein LOC100279213	-	2e-16	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.4882.1.S1_at	At5g16200	hypothetical protein LOC100193470 /// hypothetical protein LOC100273280 /// yabby15	-	2e-11	At4g00180	YAB3 (YABBY3)	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.13599.1.A1_at	At5g16200	hypothetical protein LOC100276781	-	7e-1	At5g62400	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.4333.1.A1_at	At5g16200	-	-	9e-20	At4g33090	APM1 (AMINOPEPTIDASE M1)	O.I.	H.G.	S.X.	Please select
0.76	91.1	Zm.6367.1.S1_at	At5g16200	-	-	3e-1	At4g26200	ACS7	O.I.	H.G.	S.X.	Please select
0.75	90.8	Zm.4882.2.S1_at	At5g16200	-	-	9e+0	At3g62920	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	90.3	Zm.268.1.A1_at	At5g16200	eukaryotic initiation factor 4A	-	1e-110	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please select
0.72	88.6	Zm.6467.1.A1_at	At5g16200	-	-	2e+0	At5g59470	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.6763.4.S1_at	At5g16200	hypothetical protein LOC100279574	-	8e-6	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.62	79.8	Zm.6139.2.A1_at	At5g16200	methionyl-tRNA synthetase	-	1e-5	At2g40660	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.3468.1.A1_at	At5g16200	FYVE zinc finger family protein	-	1e-2	At2g26210	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.4746.1.A1_at	At5g16200	-	-	3e-3	At1g58030	CAT2 (CATIONIC AMINO ACID TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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