Co-expression analysis

Gene ID	Os09g0462300
Gene name
Homology with Arabidopsis	Similar to At5g16200: 50S ribosomal protein-related (HF=3e+0)
Module size	6 genes
NF	0.28
%ile	28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.6	0.96	Os09g0462300	9637.m02532	-	Esterase/lipase/thioesterase domain containingprotein	3e+0	At5g16200	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.96	Os07g0216100	AK107820.1	-	Hypothetical protein	9e-2	At5g66490	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	0.96	Os09g0433500	9637.m02294	-	Glycosyl transferase, family 31 protein	5e-1	At3g29300	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	25.6	0.96	Os01g0176700	AK109808.1	-	Myb, DNA-binding domain containing protein	1e-12	At2g03500	myb family transcription factor	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	0.96	Os02g0602600	9630.m03753	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	3e+0	At5g24316	proline-rich family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	0.96	Os03g0118100	AK072029.1	-	Conserved hypothetical protein	2e-1	At4g15460	glycine-rich protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.4	99.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.5	98.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.9	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
10.0	98.0	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
9.7	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1606522_at, orthologous to the query gene, Os09g0462300

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.9	1606522_at	At5g16200	hypothetical protein LOC100245277	-	1e+0	At3g44070	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.64	84.7	1609314_at	At5g16200	hypothetical protein LOC100266108	-	4e+0	At3g04970	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1622397_at	At5g16200	-	-	7e-2	At2g39970	peroxisomal membrane protein (PMP36)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1613227_at	At5g16200	hypothetical protein LOC100247606	-	3e+0	At5g62575	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1606648_at	At5g16200	hypothetical protein LOC100257724	-	6e-37	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	1613555_at	At5g16200	hypothetical protein LOC100255874	-	2e-2	At2g45930	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	1616888_at	At5g16200	similar to lactoylglutathione lyase, putative / glyoxalase I, putative	-	3e-73	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.49	69.3	1620741_at	At5g16200	hypothetical protein LOC100243299	-	2e-2	At5g58270	STA1 (STARIK 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1620755_at	At5g16200	hypothetical protein LOC100248862	-	7e-20	At1g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1610711_s_at	At5g16200	-	-	4e+0	At4g28085	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1610508_at	At5g16200	hypothetical protein LOC100253402	-	1e-9	At3g44620	protein tyrosine phosphatase	O.I.	H.G.	S.X.	Please select
0.39	54.9	1607640_at	At5g16200	hypothetical protein LOC100249595	-	1e-19	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1611359_at	At5g16200	hypothetical protein LOC100252133	-	2e+0	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1616284_at	At5g16200	hypothetical protein LOC100250368	-	1e-44	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1620133_at	At5g16200	hypothetical protein LOC100256241	-	3e-2	At4g13220	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1611482_at	At5g16200	hypothetical LOC100250857 /// hypothetical protein LOC100262976	-	2e-2	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	1611652_s_at	At5g16200	hypothetical protein LOC100264196	-	2e-53	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1610395_s_at	At5g16200	hypothetical protein LOC100267880	-	2e-77	At3g01120	MTO1 (METHIONINE OVERACCUMULATION 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1615149_at	At5g16200	hypothetical protein LOC100248175	-	4e+0	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.33	45.7	1618020_x_at	At5g16200	hypothetical protein LOC100267942	-	8e-4	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1617652_s_at	At5g16200	hypothetical protein LOC100249964	-	3e-2	At3g63310	glutamate binding	O.I.	H.G.	S.X.	Please select
0.31	41.3	1620873_at	At5g16200	hypothetical protein LOC100247687	-	1e-15	At2g37660	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.29	37.7	1618873_at	At5g16200	hypothetical protein LOC100264953	-	1e+0	At3g05685	-	O.I.	H.G.	S.X.	Please select
0.28	37.7	1622086_at	At5g16200	hypothetical protein LOC100265288	-	1e-1	At2g20480	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1621483_at	At5g16200	hypothetical protein LOC100254964	-	2e-6	At1g12810	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1618789_at	At5g16200	hypothetical protein LOC100257710	-	4e+0	At5g42330	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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