Co-expression analysis

Gene ID	Os09g0462300
Gene name
Homology with Arabidopsis	Similar to At5g16200: 50S ribosomal protein-related (HF=3e+0)
Module size	6 genes
NF	0.28
%ile	28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.6	0.96	Os09g0462300	9637.m02532	-	Esterase/lipase/thioesterase domain containingprotein	3e+0	At5g16200	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.96	Os07g0216100	AK107820.1	-	Hypothetical protein	9e-2	At5g66490	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	0.96	Os09g0433500	9637.m02294	-	Glycosyl transferase, family 31 protein	5e-1	At3g29300	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	25.6	0.96	Os01g0176700	AK109808.1	-	Myb, DNA-binding domain containing protein	1e-12	At2g03500	myb family transcription factor	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	0.96	Os02g0602600	9630.m03753	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	3e+0	At5g24316	proline-rich family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	0.96	Os03g0118100	AK072029.1	-	Conserved hypothetical protein	2e-1	At4g15460	glycine-rich protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.4	99.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.5	98.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.9	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
10.0	98.0	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
9.7	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.23434.2.S1_a_at, orthologous to the query gene, Os09g0462300

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.3	Ta.23434.2.S1_a_at	At5g16200	-	-	4e+0	At5g16200	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.58	79.2	Ta.25903.1.A1_at	At5g16200	-	-	2e-6	At2g22870	EMB2001 (embryo defective 2001)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.23768.1.A1_at	At5g16200	-	-	3e-8	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	O.I.	H.G.	S.X.	Please select
0.55	76.8	TaAffx.42148.1.S1_s_at	At5g16200	-	-	1e-25	At5g14460	pseudouridine synthase/ transporter	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.5803.1.S1_a_at	At5g16200	-	-	7e-20	At3g15000	-	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.13976.1.S1_a_at	At5g16200	-	-	4e+0	At5g23100	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.7804.1.S1_at	At5g16200	-	-	5e+0	At4g31860	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.1705.3.S1_x_at	At5g16200	-	-	4e-3	At3g48870	HSP93-III	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.597.1.S1_at	At5g16200	-	-	7e+0	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.23312.1.S1_at	At5g16200	-	-	2e-3	At3g23920	BAM1 (BETA-AMYLASE 1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.25544.1.S1_at	At5g16200	-	-	8e+0	At3g09870	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.27905.1.S1_at	At5g16200	-	-	1e-1	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.5378.1.S1_at	At5g16200	-	-	2e-14	At5g22400	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.7182.1.S1_at	At5g16200	-	-	5e+0	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.92508.1.S1_at	At5g16200	-	-	3e-5	At5g19460	atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.1705.3.S1_a_at	At5g16200	-	-	4e-3	At3g48870	HSP93-III	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.1705.2.S1_a_at	At5g16200	-	-	6e-30	At3g48870	HSP93-III	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.13349.1.S1_a_at	At5g16200	-	-	1e-10	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.12279.1.S1_at	At5g16200	-	-	3e-6	At3g28760	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.7373.1.S1_at	At5g16200	-	-	2e-1	At3g08640	alphavirus core protein family	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.7717.1.S1_x_at	At5g16200	-	-	3e-25	At3g51820	G4	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.7717.1.S1_a_at	At5g16200	-	-	3e-25	At3g51820	G4	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.4995.2.S1_x_at	At5g16200	-	-	6e-1	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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