CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0462300

Gene name
Homology with Arabidopsis Similar to At5g16200: 50S ribosomal protein-related (HF=3e+0)

Module size 6 genes

NF 0.28

%ile 28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.96 Os09g0462300 9637.m02532 - Esterase/lipase/thioesterase domain containingprotein 3e+0 At5g16200 50S ribosomal protein-related O.I. H.G. S.X.
0.55 73.7 0.96 Os07g0216100 AK107820.1 - Hypothetical protein 9e-2 At5g66490 unknown protein O.I. H.G. S.X.
0.29 31.1 0.96 Os09g0433500 9637.m02294 - Glycosyl transferase, family 31 protein 5e-1 At3g29300 unknown protein O.I. H.G. S.X.
0.26 25.6 0.96 Os01g0176700 AK109808.1 - Myb, DNA-binding domain containing protein 1e-12 At2g03500 myb family transcription factor O.I. H.G. S.X.
0.22 19.4 0.96 Os02g0602600 9630.m03753 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e+0 At5g24316 proline-rich family protein O.I. H.G. S.X.
0.11 6.5 0.96 Os03g0118100 AK072029.1 - Conserved hypothetical protein 2e-1 At4g15460 glycine-rich protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.4 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
10.0 98.0 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
9.7 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.90122.1.S1_at, orthologous to the query gene, Os09g0462300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 PtpAffx.90122.1.S1_at At5g16200 - - 4e-2 At1g68620 hydrolase O.I. H.G. S.X.
0.67 91.1 PtpAffx.203108.1.S1_s_at At5g16200 hypothetical protein /// nbs-lrr resistance protein - 2e-1 At2g02410 unknown protein O.I. H.G. S.X.
0.67 91.1 Ptp.163.1.S1_at At5g16200 caffeic acid 3-O-methyltransferase - 2e-15 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.44 71.9 Ptp.6936.1.S1_at At5g16200 hypothetical protein - 4e-1 At2g29440 ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6) O.I. H.G. S.X.
0.40 67.0 PtpAffx.9889.1.A1_at At5g16200 hypothetical protein - 1e+0 At2g43520 ATTI2 O.I. H.G. S.X.
0.31 53.7 PtpAffx.90506.1.A1_at At5g16200 hypothetical protein - 3e-2 At2g39410 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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