CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0462300

Gene name
Homology with Arabidopsis Similar to At5g16200: 50S ribosomal protein-related (HF=3e+0)

Module size 6 genes

NF 0.28

%ile 28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.96 Os09g0462300 9637.m02532 - Esterase/lipase/thioesterase domain containingprotein 3e+0 At5g16200 50S ribosomal protein-related O.I. H.G. S.X.
0.55 73.7 0.96 Os07g0216100 AK107820.1 - Hypothetical protein 9e-2 At5g66490 unknown protein O.I. H.G. S.X.
0.29 31.1 0.96 Os09g0433500 9637.m02294 - Glycosyl transferase, family 31 protein 5e-1 At3g29300 unknown protein O.I. H.G. S.X.
0.26 25.6 0.96 Os01g0176700 AK109808.1 - Myb, DNA-binding domain containing protein 1e-12 At2g03500 myb family transcription factor O.I. H.G. S.X.
0.22 19.4 0.96 Os02g0602600 9630.m03753 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e+0 At5g24316 proline-rich family protein O.I. H.G. S.X.
0.11 6.5 0.96 Os03g0118100 AK072029.1 - Conserved hypothetical protein 2e-1 At4g15460 glycine-rich protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.4 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.5 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
10.0 98.0 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
9.7 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.psMC010xG09f_at, orthologous to the query gene, Os09g0462300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 93.0 PsAffx.psMC010xG09f_at At5g16200 - - 1e+1 At1g72175 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.61 81.8 PsAffx.CL860Contig1_at At5g16200 - - 8e-2 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.48 67.7 PsAffx.CL982Contig1_at At5g16200 - - 2e+1 At5g06240 emb2735 (embryo defective 2735) O.I. H.G. S.X.
0.47 66.6 PsAffx.C197000019_at At5g16200 - - 1e+0 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) O.I. H.G. S.X.
0.45 63.9 PsAffx.psZS008xC17f_s_at At5g16200 - - 7e-4 At1g12665 - O.I. H.G. S.X.
0.44 63.3 PsAffx.C67000061_s_at At5g16200 - - 8e-1 At5g52200 unknown protein O.I. H.G. S.X.
0.42 59.3 PsAffx.C148000016_at At5g16200 - - 6e-5 At2g36250 FTSZ2-1 O.I. H.G. S.X.
0.42 59.3 PsAffx.C103000011_at At5g16200 - - 4e+0 At5g63905 unknown protein O.I. H.G. S.X.
0.38 53.3 PsAffx.C200000014_at At5g16200 - - 1e-1 At3g14130 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative O.I. H.G. S.X.
0.36 50.8 PsAffx.C135000021_at At5g16200 - - 4e-2 At5g42790 PAF1 O.I. H.G. S.X.
0.32 43.7 PsAffx.C7000122_at At5g16200 - - 5e+0 At4g00100 ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) O.I. H.G. S.X.
0.31 42.2 PsAffx.C29000074_at At5g16200 - - 5e+0 At5g35475 - O.I. H.G. S.X.
0.24 30.9 PsAffx.CL730Contig1_at At5g16200 - - 4e+0 At5g37260 RVE2 (REVEILLE 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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