CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0456800

Gene name
Homology with Arabidopsis Similar to At2g41690: AT-HSFB3 (HF=5e-5)

Module size 6 genes

NF 0.15

%ile 12.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.85 Os09g0456800 AK101182.1 - Heat stress transcription factor Spl7 (Heat shocktranscription factor) (Heat shock factor RHSF10) 5e-5 At2g41690 AT-HSFB3 O.I. H.G. S.X.
0.67 87.2 0.87 Os02g0740700 AK065964.1 - Peptidase M10A and M12B, matrixin and adamalysinfamily protein 1e-2 At2g45040 matrix metalloproteinase O.I. H.G. S.X.
0.23 21.2 0.90 Os03g0821300 AK073306.1 - Protein phosphatase 2C-like domain containingprotein 5e-9 At3g09400 PLL3 O.I. H.G. S.X.
0.17 12.6 0.87 Os11g0585900 AK070793.1 - ETO1-like protein 1 (Ethylene overproducer 1-likeprotein 1) 5e-22 At4g02680 EOL1 (ETO1-LIKE 1) O.I. H.G. S.X.
0.09 4.9 0.86 Os02g0314600 AK068924.1 - Peptidase A1, pepsin family protein 1e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.08 4.2 0.86 Os03g0194900 AK070149.1 - Protein of unknown function DUF568 domaincontaining protein 3e-3 At3g25290 auxin-responsive family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.0 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.7 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.8 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.3 97.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0006584 The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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