CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0455500

Gene name
Homology with Arabidopsis Similar to At5g46030: unknown protein (HF=1e+1)

Module size 6 genes

NF 0.15

%ile 12.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.83 Os09g0455500 AK065686.1 - Esterase/lipase/thioesterase domain containingprotein 1e+1 At5g46030 unknown protein O.I. H.G. S.X.
0.55 73.7 0.85 Os07g0659300 AK069789.1 - Conserved hypothetical protein 2e+0 At4g24805 methyltransferase O.I. H.G. S.X.
0.38 46.9 0.85 Os05g0512200 CB623703 - Conserved hypothetical protein 2e-12 At3g01060 unknown protein O.I. H.G. S.X.
0.15 10.3 0.83 Os01g0352100 AK072222.1 - 2OG-Fe(II) oxygenase domain containing protein 7e-1 At3g47650 bundle-sheath defective protein 2 family / bsd2 family O.I. H.G. S.X.
0.07 3.7 0.84 Os04g0638100 AK103592.1 - Transferase family protein 1e+1 Atmg00300 - O.I. H.G. S.X.
0.04 2.0 0.85 Os10g0556200 CB624216 - SPATULA 8e-3 At4g00050 UNE10 (unfertilized embryo sac 10) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
79.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.3 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.0 98.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.4 96.8 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.6 96.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4 96.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1 96.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8 95.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8 95.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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