CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0447300

Gene name
Homology with Arabidopsis Similar to At3g52060: unknown protein (HF=2e+0)

Module size 22 genes

NF 0.40

%ile 48.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 96.8 0.87 Os09g0447300 CB675967 - Cytochrome P450 family protein 2e+0 At3g52060 unknown protein O.I. H.G. S.X.
0.78 93.4 0.93 Os07g0639200 9635.m04476 - - 3e+0 At3g14840 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.78 93.4 0.88 Os08g0129400 9636.m00269 - - 4e+0 At1g22520 unknown protein O.I. H.G. S.X.
0.74 91.4 0.91 Os01g0282400 NM_187704.1 - - 2e+1 At5g25280 serine-rich protein-related O.I. H.G. S.X.
0.68 87.5 0.92 Os01g0541900 CB622869 - Protein kinase domain containing protein 1e+0 At3g28250 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.65 83.8 0.88 Os01g0152500 NM_184401.1 - SWIM Zn-finger domain containing protein 3e-1 At3g24830 60S ribosomal protein L13A (RPL13aB) O.I. H.G. S.X.
0.44 58.1 0.93 Os09g0335300 9637.m01393 - - 3e-2 At5g67490 unknown protein O.I. H.G. S.X.
0.43 55.4 0.94 Os04g0334580 9632.m02511 - - 3e-1 At2g14700 unknown protein O.I. H.G. S.X.
0.42 53.9 0.95 Os01g0900400 9629.m06700 - Lipase, class 3 family protein 6e-1 At3g27270 - O.I. H.G. S.X.
0.40 51.1 0.92 Os12g0202800 9640.m00954 - 0-methyltransferase (EC 2.1.1.6) (Fragment) 7e-1 At4g35150 O-methyltransferase family 2 protein O.I. H.G. S.X.
0.39 48.3 0.93 Os01g0365201 NM_194035.1 - - 4e+0 At1g49140 NADH-ubiquinone oxidoreductase-related O.I. H.G. S.X.
0.36 44.0 0.94 Os11g0626300 9639.m03762 - - 1e+0 At4g37010 caltractin, putative / centrin, putative O.I. H.G. S.X.
0.35 41.7 0.92 Os06g0286600 9634.m01776 - - 8e+0 At5g44060 unknown protein O.I. H.G. S.X.
0.35 41.7 0.94 Os09g0432900 AK106115.1 - Glycosyl transferase, family 31 protein 3e+0 At3g50830 COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2) O.I. H.G. S.X.
0.34 40.0 0.95 Os08g0114000 AK107979.1 - Conserved hypothetical protein 7e+0 At1g03850 glutaredoxin family protein O.I. H.G. S.X.
0.29 31.1 0.92 Os10g0521300 NM_197399.1 - Inner membrane protein OXA1-like, mitochondrialprecursor 2e-1 At1g60250 zinc finger (B-box type) family protein O.I. H.G. S.X.
0.29 31.1 0.92 Os11g0269100 9639.m01517 - - 6e+0 At3g21610 - O.I. H.G. S.X.
0.24 22.4 0.91 Os07g0158500 9635.m00586 - CCAAT-binding transcription factor, subunit Bfamily protein 4e-1 At4g01985 unknown protein O.I. H.G. S.X.
0.23 21.2 0.92 Os04g0507400 9632.m04096 - - 3e+0 At3g03480 CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase) O.I. H.G. S.X.
0.22 19.4 0.93 Os06g0539500 9634.m03292 - - 3e+0 At3g15780 unknown protein O.I. H.G. S.X.
0.22 19.4 0.93 Os11g0665301 9639.m04113 - - 1e+1 At3g21352 unknown protein O.I. H.G. S.X.
0.18 13.7 0.91 Os01g0171900 9629.m00703 - - 6e-1 At3g18540 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.88	96.8	0.87	Os09g0447300	CB675967	-	Cytochrome P450 family protein	2e+0	At3g52060	unknown protein	O.I.	H.G.	S.X.
0.78	93.4	0.93	Os07g0639200	9635.m04476	-	-	3e+0	At3g14840	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.78	93.4	0.88	Os08g0129400	9636.m00269	-	-	4e+0	At1g22520	unknown protein	O.I.	H.G.	S.X.
0.74	91.4	0.91	Os01g0282400	NM_187704.1	-	-	2e+1	At5g25280	serine-rich protein-related	O.I.	H.G.	S.X.
0.68	87.5	0.92	Os01g0541900	CB622869	-	Protein kinase domain containing protein	1e+0	At3g28250	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.
0.65	83.8	0.88	Os01g0152500	NM_184401.1	-	SWIM Zn-finger domain containing protein	3e-1	At3g24830	60S ribosomal protein L13A (RPL13aB)	O.I.	H.G.	S.X.
0.44	58.1	0.93	Os09g0335300	9637.m01393	-	-	3e-2	At5g67490	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	0.94	Os04g0334580	9632.m02511	-	-	3e-1	At2g14700	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	0.95	Os01g0900400	9629.m06700	-	Lipase, class 3 family protein	6e-1	At3g27270	-	O.I.	H.G.	S.X.
0.40	51.1	0.92	Os12g0202800	9640.m00954	-	0-methyltransferase (EC 2.1.1.6) (Fragment)	7e-1	At4g35150	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.
0.39	48.3	0.93	Os01g0365201	NM_194035.1	-	-	4e+0	At1g49140	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.
0.36	44.0	0.94	Os11g0626300	9639.m03762	-	-	1e+0	At4g37010	caltractin, putative / centrin, putative	O.I.	H.G.	S.X.
0.35	41.7	0.92	Os06g0286600	9634.m01776	-	-	8e+0	At5g44060	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.94	Os09g0432900	AK106115.1	-	Glycosyl transferase, family 31 protein	3e+0	At3g50830	COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2)	O.I.	H.G.	S.X.
0.34	40.0	0.95	Os08g0114000	AK107979.1	-	Conserved hypothetical protein	7e+0	At1g03850	glutaredoxin family protein	O.I.	H.G.	S.X.
0.29	31.1	0.92	Os10g0521300	NM_197399.1	-	Inner membrane protein OXA1-like, mitochondrialprecursor	2e-1	At1g60250	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.
0.29	31.1	0.92	Os11g0269100	9639.m01517	-	-	6e+0	At3g21610	-	O.I.	H.G.	S.X.
0.24	22.4	0.91	Os07g0158500	9635.m00586	-	CCAAT-binding transcription factor, subunit Bfamily protein	4e-1	At4g01985	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.92	Os04g0507400	9632.m04096	-	-	3e+0	At3g03480	CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)	O.I.	H.G.	S.X.
0.22	19.4	0.93	Os06g0539500	9634.m03292	-	-	3e+0	At3g15780	unknown protein	O.I.	H.G.	S.X.
0.22	19.4	0.93	Os11g0665301	9639.m04113	-	-	1e+1	At3g21352	unknown protein	O.I.	H.G.	S.X.
0.18	13.7	0.91	Os01g0171900	9629.m00703	-	-	6e-1	At3g18540	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.5 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.8 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.8 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.5	99.6	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
23.8	99.4	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.8	98.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.045 1 GO:0006486 The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
0.033 1 GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.045	1	GO:0006486	The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.
0.033	1	GO:0006629	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os09g0447300
Gene name
Homology with Arabidopsis	Similar to At3g52060: unknown protein (HF=2e+0)
Module size	22 genes
NF	0.40
%ile	48.6

Co-expression analysis

Gene ID Os09g0447300 Gene name Homology with ArabidopsisSimilar to At3g52060: unknown protein (HF=2e+0) Module size 22 genes NF 0.40 %ile 48.6

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os09g0447300

Gene name
Homology with Arabidopsis Similar to At3g52060: unknown protein (HF=2e+0)

Module size 22 genes

NF 0.40

%ile 48.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays