CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0436300

Gene name
Homology with Arabidopsis Similar to At5g22610: F-box family protein (HF=8e-1)

Module size 7 genes

NF 0.42

%ile 51.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.86 Os09g0436300 AK103151.1 - Peptidase, trypsin-like serine and cysteineproteases domain containing protein 8e-1 At5g22610 F-box family protein O.I. H.G. S.X.
0.55 73.7 0.89 Os08g0543100 9636.m04377 - Disease resistance protein family protein 1e-1 At2g07340 prefoldin-related KE2 family protein O.I. H.G. S.X.
0.50 68.0 0.89 Os12g0129000 9640.m00264 - Eukaryotic protein of unknown function DUF872family protein 3e-1 At5g65350 histone H3 O.I. H.G. S.X.
0.48 63.7 0.87 Os07g0610400 9635.m04199 - - 6e+0 At4g25890 60S acidic ribosomal protein P3 (RPP3A) O.I. H.G. S.X.
0.38 46.9 0.87 Os09g0101100 AK120565.1 - - 5e-1 At3g07425 unknown protein O.I. H.G. S.X.
0.35 41.7 0.87 Os09g0406900 AK067460.1 - Conserved hypothetical protein 4e-1 At1g06320 unknown protein O.I. H.G. S.X.
0.24 22.4 0.86 Os04g0380200 AK104769.1 - Conserved hypothetical protein 1e-1 At3g27210 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.6 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.8 99.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
25.5 99.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.0 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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