CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0433000

Gene name
Homology with Arabidopsis Similar to At2g42360: zinc finger (C3HC4-type RING finger) family protein (HF=4e+0)

Module size 6 genes

NF 0.23

%ile 22.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.84 Os09g0433000 AK063243.1 - Conserved hypothetical protein 4e+0 At2g42360 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.80 94.6 0.81 Os01g0119000 AK105948.1 - Protein of unknown function DUF563 family protein 2e-5 At3g18170 transferase, transferring glycosyl groups O.I. H.G. S.X.
0.21 17.9 0.84 Os01g0296700 AK105791.1 - Glycoside hydrolase, family 3, C-terminal domaincontaining protein 2e-2 At3g22970 unknown protein O.I. H.G. S.X.
0.20 16.5 0.76 Os03g0849900 AK105978.1 - Conserved hypothetical protein 3e+0 At5g16160 unknown protein O.I. H.G. S.X.
0.12 7.2 0.82 Os03g0120900 AK106367.1 - AP2 domain containing protein RAP2.8 (Fragment) 4e-18 At4g01500 NGA4 (NGATHA4) O.I. H.G. S.X.
0.12 7.2 0.83 Os03g0144800 AK103041.1 - Xyloglucan galactosyltransferase 2e-18 At2g20370 MUR3 (MURUS 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.6 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.8 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.074 1 GO:0009987 Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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