Co-expression analysis

Gene ID Os09g0420900
Gene name
Homology with ArabidopsisSimilar to At2g23050: NPY4 (NAKED PINS IN YUC MUTANTS 4) (HF=2e-5)
Module size 6 genes
NF 0.04
%ile 2.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4660.90.88Os09g0420900AK065475.1-NPH3 domain containing protein2e-5At2g23050NPY4 (NAKED PINS IN YUC MUTANTS 4)O.I.H.G.S.X.
0.2524.10.92Os07g0630900AK122106.1-CSLA7 (Fragment)2e-8At4g13410ATCSLA15O.I.H.G.S.X.
0.2219.40.89Os01g0747500AK122010.1-Dihydroorotase, mitochondrial precursor (EC3.5.2.3) (DHOase)1e-12At4g22930PYR4 (PYRIMIDIN 4)O.I.H.G.S.X.
0.042.00.90Os04g0692800AK103159.1-Conserved hypothetical protein9e-1At2g21060ATGRP2B (GLYCINE-RICH PROTEIN 2B)O.I.H.G.S.X.
0.031.40.91Os01g0829800AK101730.1-Malate dehydrogenase precursor (EC 1.1.1.37)6e-48At3g47520MDH (MALATE DEHYDROGENASE)O.I.H.G.S.X.
0.021.00.88Os02g0806900AK105851.1-Aminotransferase, class I and II domain containingprotein2e-17At4g36480ATLCB1 (LONG-CHAIN BASE1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.299.6GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.698.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.598.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.498.1GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.497.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.097.4GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.397.2GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.796.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0019856The chemical reactions and pathways resulting in the formation of pyrimidine bases, 1,3-diazine, organic nitrogenous bases.Link to AmiGO
0.1051GO:0009416A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.Link to AmiGO
0.0151GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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