CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0413300

Gene name
Homology with Arabidopsis Similar to At4g02750: pentatricopeptide (PPR) repeat-containing protein (HF=3e-1)

Module size 6 genes

NF 0.40

%ile 48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.99 Os09g0413300 9637.m02118 - TPR-like domain containing protein 3e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.60 79.7 0.98 Os02g0159400 AK109550.1 - Hypothetical protein 8e-2 At3g46666 unknown protein O.I. H.G. S.X.
0.55 73.7 0.98 Os02g0456000 AK119496.1 - - 4e-6 At4g01400 - O.I. H.G. S.X.
0.44 58.1 0.99 Os05g0583200 AK102230.1 - BED finger domain containing protein 4e-1 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.36 44.0 0.99 Os07g0555300 AK071161.1 - Hypothetical protein 9e-2 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) O.I. H.G. S.X.
0.12 7.2 0.99 Os08g0153600 9636.m00506 - Protein prenyltransferase domain containingprotein 2e-1 At5g40405 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.0 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
57.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.2 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.6778.1.S1_at, orthologous to the query gene, Os09g0413300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 76.1 Zm.6778.1.S1_at At4g02750 - - 2e-15 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.73 89.9 Zm.13609.1.S1_at At4g02750 - - 2e+1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.63 81.1 Zm.10379.2.A1_a_at At4g02750 - - 7e-2 At3g46090 ZAT7 O.I. H.G. S.X.
0.55 71.6 Zm.9874.1.A1_at At4g02750 - - 4e-1 At3g32190 - O.I. H.G. S.X.
0.47 59.9 Zm.9753.1.A1_at At4g02750 Grx_C15 - glutaredoxin subgroup III - 2e+1 At2g43261 unknown protein O.I. H.G. S.X.
0.33 36.0 Zm.3990.1.A1_at At4g02750 - - 7e-3 At5g12240 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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