Co-expression analysis

Gene ID Os09g0413300
Gene name
Homology with ArabidopsisSimilar to At4g02750: pentatricopeptide (PPR) repeat-containing protein (HF=3e-1)
Module size 6 genes
NF 0.40
%ile 48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7391.10.99Os09g04133009637.m02118-TPR-like domain containing protein3e-1At4g02750pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.6079.70.98Os02g0159400AK109550.1-Hypothetical protein8e-2At3g46666unknown proteinO.I.H.G.S.X.
0.5573.70.98Os02g0456000AK119496.1--4e-6At4g01400-O.I.H.G.S.X.
0.4458.10.99Os05g0583200AK102230.1-BED finger domain containing protein4e-1At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.3644.00.99Os07g0555300AK071161.1-Hypothetical protein9e-2At3g22840ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)O.I.H.G.S.X.
0.127.20.99Os08g01536009636.m00506-Protein prenyltransferase domain containingprotein2e-1At5g40405-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.099.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
57.799.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
16.298.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.598.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.898.4GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.798.4GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.998.1GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.998.1GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.898.1GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage