CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0408000

Gene name
Homology with Arabidopsis Similar to At3g50590: nucleotide binding (HF=2e-11)

Module size 6 genes

NF 0.47

%ile 61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.97 Os09g0408000 AK059658.1 - Conserved hypothetical protein 2e-11 At3g50590 nucleotide binding O.I. H.G. S.X.
0.67 87.2 0.97 Os07g0564700 AK059018.1 - Hypothetical protein 5e-18 At3g43300 ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7) O.I. H.G. S.X.
0.63 82.7 0.96 Os03g0711400 AK100286.1 - Coatomer alpha subunit 4e-79 At1g62020 coatomer protein complex, subunit alpha, putative O.I. H.G. S.X.
0.55 73.7 0.97 Os01g0653800 AK111531.1 - WD40-like domain containing protein 1e-32 At5g24710 - O.I. H.G. S.X.
0.30 32.7 0.97 Os03g0265700 AK068453.1 - SH3 domain containing protein 6e-50 At2g07360 SH3 domain-containing protein O.I. H.G. S.X.
0.22 19.4 0.97 Os12g0104800 AK058259.1 - - 2e-138 At3g08530 clathrin heavy chain, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.4 96.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.0 95.9 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.9 95.8 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
3.7 95.6 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
3.4 95.2 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
3.4 95.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.3 95.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.0 94.6 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
2.8 94.3 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
2.8 94.3 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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