Co-expression analysis

Gene ID Os09g0407600
Gene name
Homology with ArabidopsisSimilar to At4g02070: MSH6 (MUTS HOMOLOG 6) (HF=4e-17)
Module size 6 genes
NF 0.30
%ile 31.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7793.10.94Os09g04076009637.m02072-DNA mismatch repair protein MutS, C-terminaldomain containing protein4e-17At4g02070MSH6 (MUTS HOMOLOG 6)O.I.H.G.S.X.
0.5573.70.94Os08g0467100AK119595.1-Conserved hypothetical protein9e-14At1g25250AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)O.I.H.G.S.X.
0.5068.00.94Os12g0555600AF435644.1-CSLD4 (Fragment)6e-4At5g16910CSLD2 (CELLULOSE-SYNTHASE LIKE D2)O.I.H.G.S.X.
0.4660.90.93Os09g0103400AK064377.1-Hypothetical protein4e-2At1g71430unknown proteinO.I.H.G.S.X.
0.4051.10.93Os02g01072009630.m00074-Diphosphomevalonate decarboxylase family protein6e-14At2g38700MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1)O.I.H.G.S.X.
0.063.00.94Os01g0957900AK068334.1-ARM repeat fold domain containing protein5e-1At2g28050pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.498.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.998.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.698.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.498.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.698.4GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.598.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.798.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.698.2GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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