Co-expression analysis

Gene ID Os09g0403000
Gene name
Homology with ArabidopsisSimilar to At1g76500: SOB3 (SUPPRESSOR OF PHYB-4#3) (HF=1e-1)
Module size 7 genes
NF 0.21
%ile 19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.10.87Os09g0403000AK111051.1-Conserved hypothetical protein1e-1At1g76500SOB3 (SUPPRESSOR OF PHYB-4#3)O.I.H.G.S.X.
0.3644.00.87Os09g0255000AK069080.1-Cell wall invertase (EC 3.2.1.26)4e+0At5g4004060S acidic ribosomal protein P2 (RPP2E)O.I.H.G.S.X.
0.3644.00.87Os03g0149800AK109394.3-Zn-finger, RING domain containing protein6e-1At2g47560zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3644.00.88Os03g0854600AK104577.1-Glycoside hydrolase, family 16 domain containingprotein7e-1At3g50820PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)O.I.H.G.S.X.
0.2727.50.87Os03g0626700AK068484.1-Multi antimicrobial extrusion protein MatE familyprotein1e-6At3g21690MATE efflux family proteinO.I.H.G.S.X.
0.127.20.87Os01g0208400AK105750.1-Conserved hypothetical protein2e-2At5g19875unknown proteinO.I.H.G.S.X.
0.073.70.88Os08g0300300AK066375.1-C1C-Nt1 protein1e+0At5g66815unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.898.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.897.6GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.497.5GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.297.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.597.2GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.397.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.696.9GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.296.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0006821The directed movement of chloride into, out of, within or between cells.Link to AmiGO
0.0801GO:0006855The directed movement of drugs across a membrane into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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