CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0397300

Gene name
Homology with Arabidopsis Similar to At1g68020: ATTPS6 (HF=7e-28)

Module size 8 genes

NF 0.12

%ile 9.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 77.0 0.87 Os09g0397300 AK105382.1 - Glycosyl transferase, family 20 domain containingprotein 7e-28 At1g68020 ATTPS6 O.I. H.G. S.X.
0.50 68.0 0.90 Os10g0207400 AK120253.1 - Conserved hypothetical protein 4e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.40 51.1 0.94 Os08g0516900 AA753851 - Conserved hypothetical protein 8e-3 At3g55460 SCL30 O.I. H.G. S.X.
0.33 38.8 0.94 Os01g0729900 AK065503.1 - Conserved hypothetical protein 2e-15 At1g53450 unknown protein O.I. H.G. S.X.
0.29 31.1 0.93 Os05g0425700 AK101519.1 - F-box protein AtFBL5 2e-4 At1g21410 SKP2A O.I. H.G. S.X.
0.29 31.1 0.94 Os03g0183300 AK058349.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 4e+0 At5g46873 - O.I. H.G. S.X.
0.08 4.2 0.90 Os03g0796900 D78609.1 - BZIP protein 4e-6 At3g54620 BZIP25 (BASIC LEUCINE ZIPPER 25) O.I. H.G. S.X.
0.03 1.4 0.89 Os09g0372900 AK059785.1 - Cyclin-like F-box domain containing protein 8e-1 At5g44130 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.1 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.2 99.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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