CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0380600

Gene name
Homology with Arabidopsis Similar to At5g67070: RALFL34 (ralf-like 34) (HF=1e+1)

Module size 6 genes

NF 0.41

%ile 51.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.78 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) O.I. H.G. S.X.
0.36 44.0 0.81 Os09g0547500 AK062595.1 - Lysine decarboxylase-like protein 5e-1 At2g35990 - O.I. H.G. S.X.
0.33 38.8 0.81 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative O.I. H.G. S.X.
0.33 38.8 0.81 Os01g0597600 AU056799 - Amino acid/polyamine transporter II family protein 5e+0 At2g35480 unknown protein O.I. H.G. S.X.
0.33 38.8 0.85 Os03g0315400 BI807304 - MYB-related protein 340 4e+0 At5g27247 unknown protein O.I. H.G. S.X.
0.29 31.1 0.80 Os09g0341500 AK073913.1 - Cyclin-like F-box domain containing protein 2e-1 At4g25190 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.6 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.5 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig19331_at, orthologous to the query gene, Os09g0380600

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 Contig19331_at At5g67070 - - 3e+0 At1g67210 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.95 99.2 Contig3959_at At5g67070 - - 3e-2 At1g36030 F-box family protein O.I. H.G. S.X.
0.95 99.2 U19359_s_at At5g67070 - - 1e-2 At3g48340 cysteine-type endopeptidase/ cysteine-type peptidase O.I. H.G. S.X.
0.90 95.7 Contig2843_at At5g67070 - - 4e-20 At3g06700 60S ribosomal protein L29 (RPL29A) O.I. H.G. S.X.
0.89 95.4 Contig8705_at At5g67070 - - 1e-58 At3g53570 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) O.I. H.G. S.X.
0.89 95.4 Contig5282_at At5g67070 - - 1e-11 At2g37340 RSZ33 O.I. H.G. S.X.
0.86 94.8 Contig3958_s_at At5g67070 - - 9e-15 At1g73030 VPS46.2 O.I. H.G. S.X.
0.84 94.3 Contig5281_at At5g67070 - - 1e-2 At3g48340 cysteine-type endopeptidase/ cysteine-type peptidase O.I. H.G. S.X.
0.73 88.7 Contig12714_at At5g67070 - - 2e-7 At3g55030 PGPS2 (phosphatidylglycerolphosphate synthase 2) O.I. H.G. S.X.
0.67 84.7 Contig11649_at At5g67070 - - 1e-1 At1g21840 UREF (urease accessory protein F) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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