CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0380600

Gene name
Homology with Arabidopsis Similar to At5g67070: RALFL34 (ralf-like 34) (HF=1e+1)

Module size 6 genes

NF 0.41

%ile 51.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.78 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) O.I. H.G. S.X.
0.36 44.0 0.81 Os09g0547500 AK062595.1 - Lysine decarboxylase-like protein 5e-1 At2g35990 - O.I. H.G. S.X.
0.33 38.8 0.81 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative O.I. H.G. S.X.
0.33 38.8 0.81 Os01g0597600 AU056799 - Amino acid/polyamine transporter II family protein 5e+0 At2g35480 unknown protein O.I. H.G. S.X.
0.33 38.8 0.85 Os03g0315400 BI807304 - MYB-related protein 340 4e+0 At5g27247 unknown protein O.I. H.G. S.X.
0.29 31.1 0.80 Os09g0341500 AK073913.1 - Cyclin-like F-box domain containing protein 2e-1 At4g25190 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.6 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.5 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g67070, orthologous to the query gene, Os09g0380600

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At5g67070 836842 RALFL34 (ralf-like 34) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. H.G. S.X.
0.60 75.7 At2g28950 817444 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. H.G. S.X.
0.40 50.8 At5g55730 835667 FLA1 (FASCICLIN-LIKE ARAB INOGALACTAN 1) fasciclin-like arabinogalactan-protein 1 (Fla1) O.I. H.G. S.X.
0.33 38.1 At1g18650 838446 PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3) Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose. O.I. H.G. S.X.
0.29 30.3 At1g70370 843373 BURP domain-containing protein / polygalacturonase, putative F:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OBMPFAV O.I. H.G. S.X.
0.16 8.8 At5g19290 832049 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:cellular_component unknown;BPOMFVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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