CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0373200

Gene name
Homology with Arabidopsis Similar to At5g20540: ATBRXL4 (BREVIS RADIX-LIKE 4) (HF=2e-1)

Module size 6 genes

NF 0.66

%ile 88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.91 Os09g0373200 AK109686.1 - Strictosidine synthase family protein 2e-1 At5g20540 ATBRXL4 (BREVIS RADIX-LIKE 4) O.I. H.G. S.X.
0.77 93.1 0.91 Os04g0353600 CB641510 - Male sterility protein family protein 2e+0 At1g35333 unknown protein O.I. H.G. S.X.
0.57 77.0 0.90 Os02g0646500 AF148877.1 - Aldehyde dehydrogenase domain containing protein 4e+0 At5g01830 armadillo/beta-catenin repeat family protein / U-box domain-containing protein O.I. H.G. S.X.
0.57 77.0 0.92 Os06g0149100 AK099064.1 - Lipolytic enzyme, G-D-S-L family protein 3e+0 At5g22810 GDSL-motif lipase, putative O.I. H.G. S.X.
0.50 68.0 0.92 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) O.I. H.G. S.X.
0.33 38.8 0.91 Os09g0125900 AK065634.1 - ATP-binding cassette, sub-family G, member 1(White protein homolog) (ATP-binding cassette transporter8). Splice isoform 3 6e-2 At1g51500 CER5 (ECERIFERUM 5) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.5 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.1 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.065 1 GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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