Co-expression analysis

Gene ID Os09g0372800
Gene name
Homology with ArabidopsisSimilar to At5g08160: ATPK3 (HF=3e-9)
Module size 6 genes
NF 0.40
%ile 49.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4051.10.96Os09g0372800AK112000.1-Protein kinase domain containing protein3e-9At5g08160ATPK3O.I.H.G.S.X.
0.6382.70.96Os01g0200000AK067737.1--1e-20At5g61500ATG3O.I.H.G.S.X.
0.4458.10.96Os03g0742400AK060249.1-MRS2-76e-26At5g64560magnesium transporter CorA-like family protein (MRS2-2)O.I.H.G.S.X.
0.4051.10.96Os01g0338200AK068083.1-Mov34/MPN/PAD-1 family protein1e+0At4g16144-O.I.H.G.S.X.
0.3644.00.96Os03g0120300AK066854.1-THH15e-14At1g14530THH1 (TOM THREE HOMOLOG 1)O.I.H.G.S.X.
0.2625.60.96Os01g0141100AK062139.1-ATPase of the AAA+ class4e-52At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.198.2GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.998.1GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.398.1GSM1952305d-seedGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
7.997.6GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
5.997.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.496.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.096.6GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.996.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.996.5GSM195222Ovary 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
4.896.5GSM159212Seed (S2, 3 - 4 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0281GO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage