Co-expression analysis

Gene ID	Os09g0363900
Gene name
Homology with Arabidopsis	Similar to At1g72970: HTH (HOTHEAD) (HF=1e-3)
Module size	6 genes
NF	0.66
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.8	0.93	Os09g0363900	AK072899.1	-	Mandelonitrile lyase-like protein	1e-3	At1g72970	HTH (HOTHEAD)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.94	Os01g0756600	AK102373.1	-	Protein of unknown function DUF642 family protein	3e-16	At2g34510	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.94	Os04g0649200	AK103112.1	-	Plant protein of unknown function DUF869 familyprotein	4e-4	At2g23360	transport protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.94	Os01g0531400	AK102373.1	-	Protein of unknown function DUF642 family protein	3e-16	At2g34510	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	0.94	Os04g0517000	AK101663.1	-	Conserved hypothetical protein	3e-2	At1g11700	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	0.92	Os07g0205500	AK103449.1	-	Protein of unknown function DUF239 domaincontaining protein	8e-23	At3g13510	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.2	98.7	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8	98.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.7	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0	98.2	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6	97.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1614959_at, orthologous to the query gene, Os09g0363900

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	1614959_at	At1g72970	hypothetical protein LOC100257499	-	1e-10	At5g47060	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.56	79.4	1609717_at	At1g72970	hypothetical protein LOC100257178	-	1e-23	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1613355_at	At1g72970	hypothetical protein LOC100260952	-	6e-12	At5g07360	amidase family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1613476_at	At1g72970	hypothetical protein LOC100248089	-	2e-9	At5g62290	nucleotide-sensitive chloride conductance regulator (ICln) family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1607861_s_at	At1g72970	hypothetical protein LOC100253534	-	4e+0	At5g19630	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1616920_at	At1g72970	hypothetical protein LOC100251933	-	2e-12	At5g05610	AL1 (ALFIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1617185_at	At1g72970	hypothetical protein LOC100263152	-	2e-2	At2g27750	nucleolar matrix protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	1621659_at	At1g72970	hypothetical protein LOC100253534	-	5e-52	At1g55500	ECT4	O.I.	H.G.	S.X.	Please select
0.35	48.5	1617420_x_at	At1g72970	-	-	2e-20	At4g18100	60S ribosomal protein L32 (RPL32A)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1620045_at	At1g72970	similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase	-	4e-38	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1612820_s_at	At1g72970	hypothetical protein LOC100241755	-	2e-30	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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