CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0363900

Gene name
Homology with Arabidopsis Similar to At1g72970: HTH (HOTHEAD) (HF=1e-3)

Module size 6 genes

NF 0.66

%ile 88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.93 Os09g0363900 AK072899.1 - Mandelonitrile lyase-like protein 1e-3 At1g72970 HTH (HOTHEAD) O.I. H.G. S.X.
0.67 87.2 0.94 Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - O.I. H.G. S.X.
0.67 87.2 0.94 Os04g0649200 AK103112.1 - Plant protein of unknown function DUF869 familyprotein 4e-4 At2g23360 transport protein-related O.I. H.G. S.X.
0.61 81.2 0.94 Os01g0531400 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - O.I. H.G. S.X.
0.53 71.3 0.94 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein O.I. H.G. S.X.
0.47 62.3 0.92 Os07g0205500 AK103449.1 - Protein of unknown function DUF239 domaincontaining protein 8e-23 At3g13510 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.2 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.7 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig2265_at, orthologous to the query gene, Os09g0363900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 Contig2265_at At1g72970 - - 4e-3 At1g72970 HTH (HOTHEAD) O.I. H.G. S.X.
0.91 98.1 HD05F01r_at At1g72970 - - 2e+1 Atcg00540 - O.I. H.G. S.X.
0.67 84.7 Contig4278_at At1g72970 - - 7e-2 At1g76550 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative O.I. H.G. S.X.
0.57 74.9 Contig15772_at At1g72970 - - 5e-7 At3g22740 HMT3 O.I. H.G. S.X.
0.55 72.0 Contig11812_at At1g72970 - - 2e-1 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) O.I. H.G. S.X.
0.48 63.2 Contig1403_at At1g72970 - - 1e-2 At3g26430 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage