CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0358400

Gene name
Homology with Arabidopsis Similar to At3g53080: galactose-binding lectin family protein (HF=2e-3)

Module size 11 genes

NF 0.39

%ile 46.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.69 Os09g0358400 9637.m01632 - - 2e-3 At3g53080 galactose-binding lectin family protein O.I. H.G. S.X.
0.44 58.1 0.78 Os12g0283400 AK110798.1 - Glutelin family protein 2e+0 At2g23550 MES6 (METHYL ESTERASE 6) O.I. H.G. S.X.
0.42 53.9 0.80 Os09g0341500 AK073913.1 - Cyclin-like F-box domain containing protein 2e-1 At4g25190 unknown protein O.I. H.G. S.X.
0.42 53.9 0.77 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) O.I. H.G. S.X.
0.40 51.1 0.76 Os01g0714600 AK059855.1 - Conserved hypothetical protein 2e+0 At5g61970 signal recognition particle-related / SRP-related O.I. H.G. S.X.
0.31 34.5 0.78 Os02g0559800 AB045120.1 - Zn-finger, RING domain containing protein 6e-1 At4g24026 unknown protein O.I. H.G. S.X.
0.31 34.5 0.82 Os01g0821600 AK108657.1 - DNA-binding WRKY domain containing protein 2e-1 At4g09460 ATMYB6 O.I. H.G. S.X.
0.30 32.7 0.77 Os08g0404500 AK103556.1 - C1-like domain containing protein 8e+0 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) O.I. H.G. S.X.
0.29 31.1 0.85 Os03g0315400 BI807304 - MYB-related protein 340 4e+0 At5g27247 unknown protein O.I. H.G. S.X.
0.26 25.6 0.81 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative O.I. H.G. S.X.
0.25 24.1 0.78 Os09g0517100 AK100778.1 - Disease resistance protein family protein 5e-1 At1g75550 glycine-rich protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.8 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
36.3 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.8 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.6 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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