Co-expression analysis

Gene ID	Os09g0354900
Gene name
Homology with Arabidopsis	Similar to At3g50550: unknown protein (HF=1e-2)
Module size	6 genes
NF	0.32
%ile	35.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	73.7	0.83	Os09g0354900	AK069410.1	-	Conserved hypothetical protein	1e-2	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	0.84	Os07g0510800	AK058358.1	-	RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein	1e-1	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	0.86	Os08g0413500	CB665620	-	Protein of unknown function DUF1262 family protein	6e-1	At1g22940	TH1 (THIAMINE REQUIRING 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	0.86	Os02g0223300	AK068568.1	-	Conserved hypothetical protein	2e-1	At2g36026	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	19.4	0.87	Os08g0484200	9636.m03794	-	Zn-finger, RING domain containing protein	7e-1	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	5.7	0.86	Os01g0774200	AK120412.1	-	-	8e-1	At1g13430	ST4C (SULFOTRANSFERASE 4C)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
73.8	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
52.3	99.9	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
45.4	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.3	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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