Co-expression analysis

Gene ID Os09g0345300
Gene name
Homology with ArabidopsisSimilar to At1g07650: leucine-rich repeat transmembrane protein kinase, putative (HF=2e-21)
Module size 6 genes
NF 0.02
%ile 1.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7793.10.87Os09g0345300AK066121.1-Receptor protein kinase2e-21At1g07650leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.1915.10.88Os11g0202300AK066860.1-Cyclin-like F-box domain containing protein1e-1At3g20015aspartic-type endopeptidaseO.I.H.G.S.X.
0.021.00.88Os02g0786200AK067937.1-Protein kinase domain containing protein5e-13At5g57610protein kinase family proteinO.I.H.G.S.X.
0.010.50.86Os11g0706100AK120985.1-Protein of unknown function DUF37 family protein5e-1At5g08590SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)O.I.H.G.S.X.
0.010.50.87Os12g05410009640.m03442-Lumazine-binding protein family protein2e+0At5g54530unknown proteinO.I.H.G.S.X.
0.010.50.88Os02g0723400AK066518.1--2e+0At3g29690transferase-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.698.1GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.297.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.197.1GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM4094319311_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
5.997.0GSM159186SAM, biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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