CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0345000

Gene name
Homology with Arabidopsis Similar to At1g53400: unknown protein (HF=7e-12)

Module size 7 genes

NF 0.29

%ile 30.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.95 Os09g0345000 AK121772.1 - Conserved hypothetical protein 7e-12 At1g53400 unknown protein O.I. H.G. S.X.
0.33 38.8 0.97 Os11g0114700 AK070834.1 - PAP/25A core domain containing protein 4e-23 At3g51620 - O.I. H.G. S.X.
0.31 34.5 0.96 Os03g0119000 AK071417.1 - Prolyl 4-hydroxylase, alpha subunit domaincontaining protein 2e-3 At5g51880 iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors O.I. H.G. S.X.
0.31 34.5 0.96 Os12g0618300 AK103368.1 - GTP-binding protein-like (Fragment) 1e-37 At2g27200 GTP-binding family protein O.I. H.G. S.X.
0.26 25.6 0.96 Os05g0515700 AK069076.1 - Conserved hypothetical protein 2e-14 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) O.I. H.G. S.X.
0.20 16.5 0.95 Os06g0186600 AK099819.1 - Conserved hypothetical protein 2e-16 At4g30780 unknown protein O.I. H.G. S.X.
0.17 12.6 0.96 Os09g0514900 AK102371.1 - Protein of unknown function DUF654 family protein 2e-2 At2g46900 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.48	63.7	0.95	Os09g0345000	AK121772.1	-	Conserved hypothetical protein	7e-12	At1g53400	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os11g0114700	AK070834.1	-	PAP/25A core domain containing protein	4e-23	At3g51620	-	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os03g0119000	AK071417.1	-	Prolyl 4-hydroxylase, alpha subunit domaincontaining protein	2e-3	At5g51880	iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os12g0618300	AK103368.1	-	GTP-binding protein-like (Fragment)	1e-37	At2g27200	GTP-binding family protein	O.I.	H.G.	S.X.
0.26	25.6	0.96	Os05g0515700	AK069076.1	-	Conserved hypothetical protein	2e-14	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	O.I.	H.G.	S.X.
0.20	16.5	0.95	Os06g0186600	AK099819.1	-	Conserved hypothetical protein	2e-16	At4g30780	unknown protein	O.I.	H.G.	S.X.
0.17	12.6	0.96	Os09g0514900	AK102371.1	-	Protein of unknown function DUF654 family protein	2e-2	At2g46900	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	79.7	0.95	Os09g0484300	AK100330.1	-	HECT domain containing protein	2e-3	At4g12570	UPL5 (UBIQUITIN PROTEIN LIGASE 5)	O.I.	H.G.	S.X.
0.44	58.1	0.96	Os05g0305700	AK064721.1	-	Homeodomain-like containing protein	7e-4	At3g07565	DNA binding	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os01g0179300	NM_189536.1	-	Conserved hypothetical protein	1e-2	At2g25670	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.95	Os12g0112600	AK068644.1	-	Hypothetical protein	1e-1	At4g23150	protein kinase family protein	O.I.	H.G.	S.X.
0.33	38.8	0.95	Os03g0137400	AK101118.1	-	Conserved hypothetical protein	4e-10	At4g35870	-	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os03g0329900	AK063486.1	-	Phosphate starvation regulator protein (Regulatoryprotein of P- starvation acclimation response Psr1)	2e-11	At4g28610	PHR1 (PHOSPHATE STARVATION RESPONSE 1)	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os04g0490700	AK072099.1	-	Conserved hypothetical protein	5e+0	At4g28485	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os04g0488000	AK111619.1	-	PITSLRE serine/threonine-protein kinase CDC2L1 (EC2.7.1.37) (Galactosyltransferase associated proteinkinase p58/GTA) (Cell division cycle 2-like 1)	2e-71	At1g67580	protein kinase family protein	O.I.	H.G.	S.X.
0.32	36.3	0.94	Os05g0302300	AK066463.1	-	Transcription factor jumonji, jmjC domaincontaining protein	2e-12	At4g20400	transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein	O.I.	H.G.	S.X.
0.32	36.3	0.95	Os04g0165400	AK100494.1	-	Hrf1 family protein	4e-5	At3g59500	integral membrane HRF1 family protein	O.I.	H.G.	S.X.
0.31	34.5	0.95	Os05g0163400	AK106311.1	-	Zn-finger, RING domain containing protein	2e-1	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.
0.31	34.5	0.95	Os01g0749300	AY344491.1	-	Heat shock factor	3e-16	At4g17750	HSF1 (HEAT SHOCK FACTOR 1)	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os03g0211100	AK111910.1	-	-	7e-10	At3g29270	ubiquitin-protein ligase	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os03g0226600	AK069173.1	-	Conserved hypothetical protein	5e-38	At3g58050	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os12g0137500	Z54153.1	-	PP2A regulatory subunit-like protein	2e-1	At5g53000	TAP46 (2A phosphatase associated protein of 46 kD)	O.I.	H.G.	S.X.
0.27	27.5	0.90	Os11g0673100	9639.m04177	-	Conserved hypothetical protein	4e-1	At3g62580	-	O.I.	H.G.	S.X.
0.27	27.5	0.92	Os05g0182900	CB620644	-	Hypothetical protein	1e+0	At5g24520	TTG1 (TRANSPARENT TESTA GLABRA 1)	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os05g0510700	AK070308.1	-	BSD domain containing protein	2e-1	At5g65910	BSD domain-containing protein	O.I.	H.G.	S.X.
0.27	27.5	0.94	Os01g0859400	AK072832.1	-	Dual specificity protein phosphatase familyprotein	1e-1	At5g65210	TGA1	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os04g0606700	AK103790.1	-	Conserved hypothetical protein	3e+0	At3g24270	APUM25 (Arabidopsis Pumilio 25)	O.I.	H.G.	S.X.
0.25	24.1	0.94	Os06g0106900	AK067326.1	-	Conserved hypothetical protein	3e+0	At5g64400	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.8 97.8 GSM262001 IAC165, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.2 97.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM262000 IAC165, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.9 97.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4 96.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
8.8	97.8	GSM262001	IAC165, 2 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.2	97.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2	97.1	GSM262000	IAC165, 2 days after infection with S. hermonthica, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.9	97.0	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1	96.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1	96.6	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8	96.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5	96.3	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5	96.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4	96.2	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0019538 The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.087	1	GO:0019538	The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os09g0345000
Gene name
Homology with Arabidopsis	Similar to At1g53400: unknown protein (HF=7e-12)
Module size	7 genes
NF	0.29
%ile	30.6

Co-expression analysis

Gene ID Os09g0345000 Gene name Homology with ArabidopsisSimilar to At1g53400: unknown protein (HF=7e-12) Module size 7 genes NF 0.29 %ile 30.6

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0871GO:0019538The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os09g0345000

Gene name
Homology with Arabidopsis Similar to At1g53400: unknown protein (HF=7e-12)

Module size 7 genes

NF 0.29

%ile 30.6

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0019538 The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays