CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0345000

Gene name
Homology with Arabidopsis Similar to At1g53400: unknown protein (HF=7e-12)

Module size 7 genes

NF 0.29

%ile 30.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.95 Os09g0345000 AK121772.1 - Conserved hypothetical protein 7e-12 At1g53400 unknown protein O.I. H.G. S.X.
0.33 38.8 0.97 Os11g0114700 AK070834.1 - PAP/25A core domain containing protein 4e-23 At3g51620 - O.I. H.G. S.X.
0.31 34.5 0.96 Os03g0119000 AK071417.1 - Prolyl 4-hydroxylase, alpha subunit domaincontaining protein 2e-3 At5g51880 iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors O.I. H.G. S.X.
0.31 34.5 0.96 Os12g0618300 AK103368.1 - GTP-binding protein-like (Fragment) 1e-37 At2g27200 GTP-binding family protein O.I. H.G. S.X.
0.26 25.6 0.96 Os05g0515700 AK069076.1 - Conserved hypothetical protein 2e-14 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) O.I. H.G. S.X.
0.20 16.5 0.95 Os06g0186600 AK099819.1 - Conserved hypothetical protein 2e-16 At4g30780 unknown protein O.I. H.G. S.X.
0.17 12.6 0.96 Os09g0514900 AK102371.1 - Protein of unknown function DUF654 family protein 2e-2 At2g46900 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.8 97.8 GSM262001 IAC165, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.2 97.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM262000 IAC165, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.9 97.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4 96.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0019538 The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

Inter-species module comparison

A co-expression module including the maize gene, Zm.8820.1.A1_at, orthologous to the query gene, Os09g0345000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 Zm.8820.1.A1_at At1g53400 hypothetical protein LOC100274665 - 1e-10 At1g16960 unknown protein O.I. H.G. S.X.
0.36 41.3 Zm.13795.2.S1_at At1g53400 squalene synthase1 - 7e-20 At4g34640 SQS1 (SQUALENE SYNTHASE 1) O.I. H.G. S.X.
0.16 9.4 Zm.95.1.A1_at At1g53400 DNA binding with one finger3 - 8e-22 At2g37590 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.14 7.7 Zm.14398.2.A1_at At1g53400 protein OS-9 - 2e-1 At3g47720 SRO4 (SIMILAR TO RCD ONE 4) O.I. H.G. S.X.
0.13 6.8 Zm.17677.1.S1_at At1g53400 - - 4e-1 At1g77220 unknown protein O.I. H.G. S.X.
0.09 4.0 Zm.4620.1.S1_at At1g53400 hypothetical protein LOC100273936 - 2e-4 At5g45600 GAS41 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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