Co-expression analysis

Gene ID Os09g0341600
Gene name
Homology with ArabidopsisSimilar to At1g77855: unknown protein (HF=2e-1)
Module size 7 genes
NF 0.47
%ile 60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.82Os09g0341600AK071689.1-Cyclin-like F-box domain containing protein2e-1At1g77855unknown proteinO.I.H.G.S.X.
0.6181.20.83Os09g0457900AK067195.1-AP2 domain containing protein RAP2.6 (Fragment)5e-1At3g23230ethylene-responsive factor, putativeO.I.H.G.S.X.
0.6181.20.86Os03g0315400BI807304-MYB-related protein 3404e+0At5g27247unknown proteinO.I.H.G.S.X.
0.5068.00.86Os05g05528009633.m04468-Conserved hypothetical protein4e+0At5g44060unknown proteinO.I.H.G.S.X.
0.3846.90.86Os02g0134200AK108331.1-Conserved hypothetical protein5e-1At5g12330LRP1 (LATERAL ROOT PRIMORDIUM 1)O.I.H.G.S.X.
0.3644.00.89Os03g02921009631.m01785-Protein phosphatase 2C family protein8e-1At4g08260protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2321.20.83Os09g0542900AK073400.1-Conserved hypothetical protein2e+0At4g24026unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5068.00.82Os03g0437200AY295345.1-Zn-finger, C2H2 type domain containing protein6e-4At5g43170AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)O.I.H.G.S.X.
0.4253.90.81Os09g0341500AK073913.1-Cyclin-like F-box domain containing protein2e-1At4g25190unknown proteinO.I.H.G.S.X.
0.4051.10.81Os01g0597600AU056799-Amino acid/polyamine transporter II family protein5e+0At2g35480unknown proteinO.I.H.G.S.X.
0.3644.00.84Os09g0522000AY166833.1-CBF-like protein5e-1At5g14360ubiquitin family proteinO.I.H.G.S.X.
0.3644.00.88Os07g0680600AK059307.1-Conserved hypothetical protein5e+0At5g18200UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferaseO.I.H.G.S.X.
0.3644.00.90Os01g0955100AK062671.1-Regulator of gene silencing9e-2At3g19580AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)O.I.H.G.S.X.
0.3541.70.83Os01g0821600AK108657.1-DNA-binding WRKY domain containing protein2e-1At4g09460ATMYB6O.I.H.G.S.X.
0.3338.80.78Os09g0380600AK063655.1-Conserved hypothetical protein1e+1At5g67070RALFL34 (ralf-like 34)O.I.H.G.S.X.
0.3338.80.84Os01g0699600AK105196.1-Protein kinase domain containing protein2e-4At1g07150MAPKKK13O.I.H.G.S.X.
0.3134.50.76Os05g0575000CB649864-Conserved hypothetical protein2e+0At1g12064unknown proteinO.I.H.G.S.X.
0.3032.70.79Os03g0302800AK061293.1-Conserved hypothetical protein4e-5At5g38700unknown proteinO.I.H.G.S.X.
0.2931.10.84Os02g0624300AK112056.1-MYB1 protein9e-6At3g23250MYB15 (MYB DOMAIN PROTEIN 15)O.I.H.G.S.X.
0.2931.10.87Os05g0476700AY224537.1-U box domain containing protein2e-2At5g23100unknown proteinO.I.H.G.S.X.
0.2727.50.69Os09g03584009637.m01632--2e-3At3g53080galactose-binding lectin family proteinO.I.H.G.S.X.
0.2727.50.80Os03g0820400CB964817--7e+0At2g28710zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2727.50.83Os02g0327500AK069802.1-Arabidopsis protein of unknown function DUF266family protein1e-2At1g68390unknown proteinO.I.H.G.S.X.
0.2625.60.66Os03g0663500U77656.1-Thaumatin, pathogenesis-related family protein7e+0At3g25400-O.I.H.G.S.X.
0.2524.10.84Os01g0498300AK069247.1-Protein of unknown function DUF563 family protein3e-1At2g41640transferase, transferring glycosyl groupsO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.898.7GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.398.6GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
13.898.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.798.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.798.5GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
13.698.5GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.098.4GSM195218stigma 1, biological rep1GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
12.498.3GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.398.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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