CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0326900

Gene name
Homology with Arabidopsis Similar to At1g36730: eukaryotic translation initiation factor 5, putative / eIF-5, putative (HF=7e-36)

Module size 11 genes

NF 0.22

%ile 21.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.96 Os09g0326900 AK067685.1 - - 7e-36 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative O.I. H.G. S.X.
0.33 38.8 0.97 Os05g0349500 AK101703.1 - RanBP1 domain containing protein 7e-2 At4g31440 unknown protein O.I. H.G. S.X.
0.31 34.5 0.97 Os05g0564200 AK070198.1 - U2 snRNP auxiliary factor, small subunit 2e-22 At1g27650 ATU2AF35A O.I. H.G. S.X.
0.27 27.5 0.97 Os12g0628500 AK122063.1 - Methionine aminopeptidase-like protein 2e-29 At3g59990 MAP2B (METHIONINE AMINOPEPTIDASE 2B) O.I. H.G. S.X.
0.26 25.6 0.97 Os03g0791500 9631.m05671 - Synaptobrevin family protein 6e-26 At1g11890 SEC22 O.I. H.G. S.X.
0.20 16.5 0.96 Os01g0550100 AK066233.1 - Ubiquitin-specific protease 6 5e-21 At1g51710 UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) O.I. H.G. S.X.
0.19 15.1 0.96 Os03g0209400 AK059829.1 - Got1-like protein family protein 9e-6 At5g01430 Got1-like family protein O.I. H.G. S.X.
0.18 13.7 0.96 Os11g0296800 AK069908.1 - Conserved hypothetical protein 1e+0 At1g62333 unknown protein O.I. H.G. S.X.
0.16 11.3 0.97 Os03g0800100 NM_185036.1 - Cactin 1e-22 At1g03910 - O.I. H.G. S.X.
0.15 10.3 0.97 Os02g0803700 AK103936.1 - 26S protease regulatory subunit 6A homolog(TAT-binding protein homolog 1) (TBP-1) 7e-72 At3g05530 RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) O.I. H.G. S.X.
0.15 10.3 0.96 Os04g0118400 AK101166.1 - Elongation factor EF-2 (Fragment) 0 At1g56070 LOS1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.0 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.143 1 GO:0006446 Any process that modulates the frequency, rate or extent of translational initiation.
0.053 1 GO:0006413 The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
0.034 1 GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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