CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0326100

Gene name
Homology with Arabidopsis Similar to At5g65700: BAM1 (BARELY ANY MERISTEM 1) (HF=6e-3)

Module size 6 genes

NF 0.68

%ile 90.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.85 Os09g0326100 AK120843.1 - Protein kinase domain containing protein 6e-3 At5g65700 BAM1 (BARELY ANY MERISTEM 1) O.I. H.G. S.X.
0.67 87.2 0.91 Os01g0905400 AK063530.1 - Transcriptional factor B3 family protein 2e-2 At4g14580 CIPK4 (CBL-interacting protein kinase 4) O.I. H.G. S.X.
0.57 77.0 0.82 Os02g0467300 AK064583.1 - Conserved hypothetical protein 8e-2 At1g60640 unknown protein O.I. H.G. S.X.
0.55 73.7 0.91 Os01g0971600 AK070366.1 - Sn-glycerol-3-phosphate dehydrogenase (Fragment) 4e-12 At5g40610 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH O.I. H.G. S.X.
0.55 73.7 0.91 Os12g0571500 AK119942.1 - Hypothetical protein 3e-1 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.
0.50 68.0 0.92 Os12g0250800 CF318760 - Hypothetical protein 4e+0 At5g04390 zinc finger (C2H2 type) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.8 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.0 97.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
8.5 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0046168 The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol.
0.133 1 GO:0006072 The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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