CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0323100

Gene name
Homology with Arabidopsis Similar to At1g80400: zinc finger (C3HC4-type RING finger) family protein (HF=1e-3)

Module size 6 genes

NF 0.59

%ile 80.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.96 Os09g0323100 AK069027.1 - Zn-finger, RING domain containing protein 1e-3 At1g80400 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.83 95.8 0.95 Os12g0612100 AK101614.1 - Hypothetical protein 9e-1 At5g38290 peptidyl-tRNA hydrolase family protein O.I. H.G. S.X.
0.57 77.0 0.96 Os10g0464400 AY332469.1 - Riboflavin kinase / FAD synthetase family protein 3e-22 At4g21470 ATFMN/FHY (riboflavin kinase/FMN hydrolase) O.I. H.G. S.X.
0.53 71.3 0.96 Os05g0101200 AY262026.1 - Peroxisomal membrane anchor protein (Pex14p)domain containing protein 1e+0 At5g61660 glycine-rich protein O.I. H.G. S.X.
0.44 58.1 0.97 Os01g0104100 AK072797.1 - The start codon is not identified. 1e-2 At3g54360 protein binding / zinc ion binding O.I. H.G. S.X.
0.33 38.8 0.96 Os02g0201000 AK064792.1 - Conserved hypothetical protein 7e-2 At5g25360 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.1 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
3.4 95.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.4 95.2 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
2.8 94.3 GSM409433 9311_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.7 94.1 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
2.6 93.8 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.6 93.8 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
2.6 93.8 GSM409431 9311_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.6 93.8 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
2.5 93.6 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
0.250 1 GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
0.250 1 GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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