Co-expression analysis

Gene ID Os09g0308900
Gene name
Homology with ArabidopsisSimilar to At1g15080: LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) (HF=3e-6)
Module size 6 genes
NF 0.14
%ile 11.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5978.00.93Os09g0308900AK121946.1-Phosphoesterase, PA-phosphatase related familyprotein3e-6At1g15080LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)O.I.H.G.S.X.
0.5068.00.93Os01g0723400AB053295.1-Malic oxidoreductase family protein7e-27At1g79750ATNADP-ME4 (NADP-malic enzyme 4)O.I.H.G.S.X.
0.3338.80.95Os05g0310500AK101093.1-Cathepsin B (Fragment)1e-33At1g02300cathepsin B-like cysteine protease, putativeO.I.H.G.S.X.
0.116.50.93Os07g0632800NM_193100.1-Protein kinase domain containing protein1e-48At1g14000VIK (VH1-INTERACTING KINASE)O.I.H.G.S.X.
0.084.20.94Os04g0525900AK065806.1-Major facilitator superfamily protein1e-18At5g64500membrane protein-relatedO.I.H.G.S.X.
0.063.00.93Os06g0644200D45383.1-Vacuolar H+-pyrophosphatase (EC 3.6.1.1)9e-175At1g15690AVP1O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.199.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.498.3GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.697.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.597.5GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.497.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.297.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.197.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1821GO:0006108The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.Link to AmiGO
0.0631GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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