CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0304800

Gene name
Homology with Arabidopsis Similar to At4g35320: unknown protein (HF=2e+0)

Module size 7 genes

NF 0.14

%ile 11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.33 38.8 0.76 Os09g0304800 CB681576 - Conserved hypothetical protein 2e+0 At4g35320 unknown protein O.I. H.G. S.X.
0.36 44.0 0.79 Os01g0117200 AK120089.1 - ARK protein (Fragment) 1e-3 At5g18610 protein kinase family protein O.I. H.G. S.X.
0.35 41.7 0.70 Os09g0358400 9637.m01632 - - 2e-3 At3g53080 galactose-binding lectin family protein O.I. H.G. S.X.
0.15 10.3 0.75 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) O.I. H.G. S.X.
0.15 10.3 0.69 Os12g0499200 9640.m03053 - Hypothetical protein 3e-3 At5g19260 unknown protein O.I. H.G. S.X.
0.12 7.2 0.63 Os02g0615400 9630.m03879 - Leucine-rich repeat, plant specific containingprotein 2e+0 At1g25370 unknown protein O.I. H.G. S.X.
0.06 3.0 0.70 Os07g0541500 AK111550.1 - KI domain interacting kinase 1 3e-4 At4g23190 CRK11 (CYSTEINE-RICH RLK11) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.5 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.1 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.9 99.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g35320, orthologous to the query gene, Os09g0304800

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.27 26.2 At4g35320 829686 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.67 81.6 At1g04240 839570 SHY2 (SHORT HYPOCOTYL 2) SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. O.I. H.G. S.X.
0.55 70.6 At2g17230 816228 EXL5 (EXORDIUM LIKE 5) F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. H.G. S.X.
0.50 65.3 At3g19680 821505 unknown protein F:unknown;P:unknown;C:plasma membrane;OPMBF O.I. H.G. S.X.
0.50 65.3 At5g03120 831807 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.18 11.4 At5g08330 830730 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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