CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0293500

Gene name
Homology with Arabidopsis Similar to At3g13380: BRL3 (BRI1-LIKE 3) (HF=9e-15)

Module size 10 genes

NF 0.55

%ile 74.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.90 Os09g0293500 9637.m00942 - BRASSINOSTEROID INSENSITIVE 1 precursor (EC2.7.1.37) (AtBRI1) (Brassinosteroid LRR receptor kinase) 9e-15 At3g13380 BRL3 (BRI1-LIKE 3) O.I. H.G. S.X.
0.70 88.4 0.92 Os07g0193000 9635.m00915 - HIPL1 protein precursor 3e-1 At5g62630 HIPL2 (HIPL2 PROTEIN PRECURSOR) O.I. H.G. S.X.
0.59 78.0 0.92 Os04g0684300 AK105205.1 - Hypothetical protein 2e+1 Atcg00560 - O.I. H.G. S.X.
0.59 78.0 0.92 Os01g0678800 AK062840.1 - Heavy metal transport/detoxification proteindomain containing protein 3e-1 At1g20220 nucleic acid binding O.I. H.G. S.X.
0.56 76.3 0.88 Os08g0245200 AK069932.1 - 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) 3e-10 At3g21240 4CL2 (4-COUMARATE:COA LIGASE 2) O.I. H.G. S.X.
0.55 73.7 0.92 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) O.I. H.G. S.X.
0.48 63.7 0.92 Os03g0245500 AK064707.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 1e+1 At5g53560 CB5-E (CYTOCHROME B5 ISOFORM E) O.I. H.G. S.X.
0.46 60.9 0.91 Os07g0421300 AK121014.1 - Glycoside hydrolase, family 31 protein 7e-15 At3g23640 HGL1 (heteroglycan glucosidase 1) O.I. H.G. S.X.
0.43 55.4 0.92 Os05g0276500 U30479.1 - Expansin Os-EXPA3 5e-1 At2g39700 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) O.I. H.G. S.X.
0.38 46.9 0.91 Os08g0477500 AU033142 - S.tuberosum patatin (Fragment) 2e+0 At1g28280 VQ motif-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.3 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.0 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.9 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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