CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0293400

Gene name
Homology with Arabidopsis Similar to At5g56150: UBC30 (ubiquitin-conjugating enzyme 30) (HF=1e-10)

Module size 6 genes

NF 0.36

%ile 42.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.92 Os09g0293400 AK059627.1 - Ubiquitin-conjugating enzyme E2 1e-10 At5g56150 UBC30 (ubiquitin-conjugating enzyme 30) O.I. H.G. S.X.
0.44 58.1 0.93 Os03g0743900 AK099593.1 - ATP sulfurylase (EC 2.7.7.4) 1e-24 At3g22890 APS1 (ATP SULFURYLASE 1) O.I. H.G. S.X.
0.40 51.1 0.93 Os03g0736700 AK073026.1 - GRAM domain containing protein 6e-1 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related O.I. H.G. S.X.
0.35 41.7 0.93 Os02g0606800 AK073760.1 - Isochorismatase hydrolase family protein 5e-1 At1g69080 universal stress protein (USP) family protein O.I. H.G. S.X.
0.32 36.3 0.93 Os05g0564800 AK120640.1 - Conserved hypothetical protein 1e-3 At1g17080 unknown protein O.I. H.G. S.X.
0.23 21.2 0.93 Os08g0566900 AK100851.1 - Mpv17/PMP22 family protein 2e+0 At5g56020 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.2 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.0 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.3 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0000103 The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.
0.047 1 GO:0016579 The removal of one or more ubiquitin moieties from a protein.
0.034 1 GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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