CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0281700

Gene name
Homology with Arabidopsis Similar to At5g47960: ATRABA4C (HF=1e-17)

Module size 9 genes

NF 0.55

%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.96 Os09g0281700 X59276.1 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C O.I. H.G. S.X.
0.73 91.1 0.96 Os06g0714200 BM419528 - Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein 8e-19 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.
0.71 89.6 0.96 Os04g0517400 AK059571.1 - Conserved hypothetical protein 5e-15 At5g18480 PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6) O.I. H.G. S.X.
0.63 82.7 0.96 Os01g0780500 AF225922.1 - SCAMP family protein 1e-14 At2g20840 secretory carrier membrane protein (SCAMP) family protein O.I. H.G. S.X.
0.53 71.3 0.96 Os02g0581300 AK071553.1 - ASC1 (Alternaria stem canker resistance protein) 5e-8 At3g25540 LAG1 O.I. H.G. S.X.
0.44 58.1 0.96 Os06g0188000 AK066305.1 - Cyclic nucleotide-gated channel C (Fragment) 1e-11 At4g30360 ATCNGC17 O.I. H.G. S.X.
0.42 53.9 0.96 Os02g0822400 AK062258.1 - No apical meristem (NAM) protein domain containingprotein 5e-3 At5g09330 anac082 (Arabidopsis NAC domain containing protein 82) O.I. H.G. S.X.
0.42 53.9 0.96 Os01g0338200 AK068083.1 - Mov34/MPN/PAD-1 family protein 1e+0 At4g16144 - O.I. H.G. S.X.
0.32 36.3 0.97 Os01g0141100 AK062139.1 - ATPase of the AAA+ class 4e-52 At2g27600 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 96.5 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.4 96.2 GSM275413 Azucena root tip_Buckled at the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.3 96.1 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.5 95.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.4 95.2 GSM275412 Azucena root tip Buckled at the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.2 94.9 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
2.8 94.3 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
2.7 94.1 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
2.7 94.1 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
2.7 94.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.083 1 GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.053 1 GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.
0.028 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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