CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0264400

Gene name
Homology with Arabidopsis Similar to At5g54530: unknown protein (HF=6e-2)

Module size 6 genes

NF 0.69

%ile 91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.80 Os09g0264400 AK100987.1 - E-class P450, group I family protein 6e-2 At5g54530 unknown protein O.I. H.G. S.X.
0.73 91.1 0.80 Os04g0614500 AK100259.1 - Aminotransferase class-III family protein 7e-11 At3g22200 POP2 (POLLEN-PISTIL INCOMPATIBILITY 2) O.I. H.G. S.X.
0.67 87.2 0.78 Os11g0687100 CR287582 - contains InterPro domain(s): IPR002035 4e+0 At5g59740 UDP-galactose/UDP-glucose transporter-related O.I. H.G. S.X.
0.59 78.0 0.80 Os12g0560100 9640.m03620 - Lipoxygenase (EC 1.13.11.12) 2e+0 At3g62840 - O.I. H.G. S.X.
0.50 68.0 0.80 Os10g0118000 AK069721.1 - O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT) 3e+0 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.50 68.0 0.85 Os09g0262000 9637.m00643 - Cinnamoyl-CoA reductase (EC 1.2.1.44) 2e+0 At4g11930 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.5 99.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.9 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.7 99.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.0 99.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.8 99.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.0 99.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.6 99.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.2 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage