CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os09g0252000

Gene name
Homology with Arabidopsis Similar to At3g61620: RRP41 (HF=1e+0)

Module size 6 genes

NF 0.29

%ile 30.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.95 Os09g0252000 BI801996 - Exonuclease RRP41 1e+0 At3g61620 RRP41 O.I. H.G. S.X.
0.53 71.3 0.95 Os08g0154700 CF324539 - Small nuclear ribonucleoprotein (Sm protein)family protein 9e-24 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative O.I. H.G. S.X.
0.33 38.8 0.96 Os03g0699400 AK069110.1 - N-acetyltransferase 5 (EC 2.3.1.-) 3e-27 At1g03150 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.29 31.1 0.95 Os01g0264800 AK059509.1 - Breast carcinoma amplified sequence 2 familyprotein 2e-1 At5g53680 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.21 17.9 0.96 Os12g0540900 AK102417.1 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2)(Tryptophan--tRNA ligase) (TrpRS) 3e-19 At3g04600 tRNA synthetase class I (W and Y) family protein O.I. H.G. S.X.
0.09 4.9 0.96 Os03g0174100 CR293263 - RNA Binding Protein 45 1e+0 At3g02700 NC domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 96.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.1 94.8 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
3.0 94.6 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
3.0 94.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.0 94.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.0 94.6 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
2.9 94.5 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.9 94.5 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
2.8 94.3 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
2.8 94.3 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
0.087 1 GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage