Co-expression analysis

Gene ID Os09g0129600
Gene name
Homology with ArabidopsisSimilar to At2g46610: arginine/serine-rich splicing factor, putative (HF=9e-1)
Module size 6 genes
NF 0.59
%ile 79.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.69Os09g01296009637.m00266-Site-specific recombinase family protein9e-1At2g46610arginine/serine-rich splicing factor, putativeO.I.H.G.S.X.
0.7391.10.64Os02g06499009630.m04172-Iron-phytosiderophore transporter protein yellowstripe 12e-5At5g24380YSL2 (YELLOW STRIPE LIKE 2)O.I.H.G.S.X.
0.5068.00.81Os03g0751100BU673383--5e-28At4g16370ATOPT3 (OLIGOPEPTIDE TRANSPORTER)O.I.H.G.S.X.
0.4660.90.81Os07g0258400AK103557.1-Metal transporter Nramp6 (AtNramp6)2e-8At1g80830NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)O.I.H.G.S.X.
0.4458.10.83Os01g0871600AK103248.1-TGF-beta receptor, type I/II extracellular regionfamily protein2e-1At5g07730unknown proteinO.I.H.G.S.X.
0.4355.40.82Os03g0379300AK068704.1--1e-1At4g26940galactosyltransferase family proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.197.1GSM302920root_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
5.596.8GSM195226RootGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
5.496.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
4.896.5GSM195225ShootGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
4.296.0GSM154942Root_tZ-treatment_120min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO
4.196.0GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM154944Root_tZ-treatment_120min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO
3.995.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
3.695.5GSM359922Pokkali root, salt-treated, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stressLink to GEO
3.595.3GSM154833Root_tZ-treatment_30min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0341GO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.Link to AmiGO
0.0211GO:0006310Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.Link to AmiGO
0.0131GO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage